BS28180.complete Sequence
797 bp assembled on 2012-03-05
GenBank Submission: KX801075
> BS28180.complete
GAAGTTATCAGTCGACATGTCACGATCTCCCTGCTGGATTTTCCTTTTAT
ATTTGGTCCTTATCATTTTCACTTTTACTTTCGCACAAAACTATTGCGAT
CCAGAACTGTGTCCCAGTGGAAGACACGTGGCCTGCCAAAACAGCGGTCG
CTTTGTGAGCGGTTGCAGCGGCGAGTTTGTCCAAGTGGATGCCCACATCC
CGCTGATTCTCCAGCTGCACAACGAACGCCGCAACCTGATCGCTGGCGGT
GGAGTTAGTGGCTTCCCCAGTGCCGTCCAAATGGCCACAATGTCCTGGGA
CACGACACTGGCCCAACTGGCCGCCTACAATGCGCTGCAGTGCCGCATGG
CGCACGACGAATGCCGCAACACGAACACGTATCGCTATGCCGGCCAGAAT
CTGAGCATTCTCTTCACCCGAAGTGTGGATGTGGCGGTCTTCCTGCGCCA
ACGGATCGCCGCCTGGTTCGATGAGAATCGGGATGCGACCAGTGGCGACA
TGGAGGACTATCAGATGCGCGGTGGACCAGCAATTGGCCACTTCACCACC
ATGGTCAACGAGCGAAATAACCGAGTGGGTTGTGCGATTGCTCGATTTAC
GGACGCCAACAATGTGCAGGCCACCCTGCTGGCTTGCAACTACGCGGTCA
CCAATGTGGTGAATAACCCGGTTTACAGGGCGGGAACCGCTGCCTCGGAA
TGCACTACAGGACGAAACTCCAACTATCCGAATCTCTGCTCGCCCAACGA
GGTGTACAACTATAATCAATGGTCGGGATAAAAGCTTTCTAGACCAT
BS28180.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:18:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32679-RA | 765 | CG32679-PA | 1..765 | 17..781 | 3825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:18:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32679-RA | 884 | CG32679-RA | 12..776 | 17..781 | 3825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:17:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10366818..10367197 | 528..149 | 1900 | 100 | Minus |
X | 23542271 | X | 10366510..10366762 | 781..529 | 1265 | 100 | Minus |
X | 23542271 | X | 10367330..10367461 | 148..17 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:18:01 has no hits.
BS28180.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 17:39:43 Download gff for
BS28180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32679-RA | 1..763 | 17..779 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:08 Download gff for
BS28180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32679-RA | 12..774 | 17..779 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:08:00 Download gff for
BS28180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32679-RA | 12..774 | 17..779 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:08:00 Download gff for
BS28180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10366512..10366762 | 529..779 | 100 | <- | Minus |
X | 10366818..10367197 | 149..528 | 100 | <- | Minus |
X | 10367330..10367461 | 17..148 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:08 Download gff for
BS28180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10260851..10261230 | 149..528 | 100 | <- | Minus |
arm_X | 10261363..10261494 | 17..148 | 100 | | Minus |
arm_X | 10260545..10260795 | 529..779 | 100 | <- | Minus |
BS28180.pep Sequence
Translation from 16 to 780
> BS28180.pep
MSRSPCWIFLLYLVLIIFTFTFAQNYCDPELCPSGRHVACQNSGRFVSGC
SGEFVQVDAHIPLILQLHNERRNLIAGGGVSGFPSAVQMATMSWDTTLAQ
LAAYNALQCRMAHDECRNTNTYRYAGQNLSILFTRSVDVAVFLRQRIAAW
FDENRDATSGDMEDYQMRGGPAIGHFTTMVNERNNRVGCAIARFTDANNV
QATLLACNYAVTNVVNNPVYRAGTAASECTTGRNSNYPNLCSPNEVYNYN
QWSG*
BS28180.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:49:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32679-PA | 254 | CG32679-PA | 1..254 | 1..254 | 1368 | 100 | Plus |
Ag5r2-PA | 254 | CG9540-PA | 5..254 | 10..252 | 465 | 38.2 | Plus |
CG9822-PA | 263 | CG9822-PA | 12..259 | 14..250 | 436 | 40.6 | Plus |
CG17974-PA | 259 | CG17974-PA | 5..258 | 8..250 | 422 | 38.2 | Plus |
Ag5r-PC | 256 | CG9538-PC | 6..252 | 10..250 | 405 | 36.7 | Plus |