Clone BS28180 Report

Search the DGRC for BS28180

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:281
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG32679-RA
Protein status:BS28180.pep: gold
Sequenced Size:797

Clone Sequence Records

BS28180.complete Sequence

797 bp assembled on 2012-03-05

GenBank Submission: KX801075

> BS28180.complete
GAAGTTATCAGTCGACATGTCACGATCTCCCTGCTGGATTTTCCTTTTAT
ATTTGGTCCTTATCATTTTCACTTTTACTTTCGCACAAAACTATTGCGAT
CCAGAACTGTGTCCCAGTGGAAGACACGTGGCCTGCCAAAACAGCGGTCG
CTTTGTGAGCGGTTGCAGCGGCGAGTTTGTCCAAGTGGATGCCCACATCC
CGCTGATTCTCCAGCTGCACAACGAACGCCGCAACCTGATCGCTGGCGGT
GGAGTTAGTGGCTTCCCCAGTGCCGTCCAAATGGCCACAATGTCCTGGGA
CACGACACTGGCCCAACTGGCCGCCTACAATGCGCTGCAGTGCCGCATGG
CGCACGACGAATGCCGCAACACGAACACGTATCGCTATGCCGGCCAGAAT
CTGAGCATTCTCTTCACCCGAAGTGTGGATGTGGCGGTCTTCCTGCGCCA
ACGGATCGCCGCCTGGTTCGATGAGAATCGGGATGCGACCAGTGGCGACA
TGGAGGACTATCAGATGCGCGGTGGACCAGCAATTGGCCACTTCACCACC
ATGGTCAACGAGCGAAATAACCGAGTGGGTTGTGCGATTGCTCGATTTAC
GGACGCCAACAATGTGCAGGCCACCCTGCTGGCTTGCAACTACGCGGTCA
CCAATGTGGTGAATAACCCGGTTTACAGGGCGGGAACCGCTGCCTCGGAA
TGCACTACAGGACGAAACTCCAACTATCCGAATCTCTGCTCGCCCAACGA
GGTGTACAACTATAATCAATGGTCGGGATAAAAGCTTTCTAGACCAT

BS28180.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG32679-RA 765 CG32679-PA 1..765 17..781 3825 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG32679-RA 884 CG32679-RA 12..776 17..781 3825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:17:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10366818..10367197 528..149 1900 100 Minus
X 23542271 X 10366510..10366762 781..529 1265 100 Minus
X 23542271 X 10367330..10367461 148..17 660 100 Minus
Blast to na_te.dros performed on 2014-11-28 05:18:01 has no hits.

BS28180.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 17:39:43 Download gff for BS28180.complete
Subject Subject Range Query Range Percent Splice Strand
CG32679-RA 1..763 17..779 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:08 Download gff for BS28180.complete
Subject Subject Range Query Range Percent Splice Strand
CG32679-RA 12..774 17..779 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:08:00 Download gff for BS28180.complete
Subject Subject Range Query Range Percent Splice Strand
CG32679-RA 12..774 17..779 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:08:00 Download gff for BS28180.complete
Subject Subject Range Query Range Percent Splice Strand
X 10366512..10366762 529..779 100 <- Minus
X 10366818..10367197 149..528 100 <- Minus
X 10367330..10367461 17..148 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:08 Download gff for BS28180.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10260851..10261230 149..528 100 <- Minus
arm_X 10261363..10261494 17..148 100   Minus
arm_X 10260545..10260795 529..779 100 <- Minus

BS28180.pep Sequence

Translation from 16 to 780

> BS28180.pep
MSRSPCWIFLLYLVLIIFTFTFAQNYCDPELCPSGRHVACQNSGRFVSGC
SGEFVQVDAHIPLILQLHNERRNLIAGGGVSGFPSAVQMATMSWDTTLAQ
LAAYNALQCRMAHDECRNTNTYRYAGQNLSILFTRSVDVAVFLRQRIAAW
FDENRDATSGDMEDYQMRGGPAIGHFTTMVNERNNRVGCAIARFTDANNV
QATLLACNYAVTNVVNNPVYRAGTAASECTTGRNSNYPNLCSPNEVYNYN
QWSG*

BS28180.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG32679-PA 254 CG32679-PA 1..254 1..254 1368 100 Plus
Ag5r2-PA 254 CG9540-PA 5..254 10..252 465 38.2 Plus
CG9822-PA 263 CG9822-PA 12..259 14..250 436 40.6 Plus
CG17974-PA 259 CG17974-PA 5..258 8..250 422 38.2 Plus
Ag5r-PC 256 CG9538-PC 6..252 10..250 405 36.7 Plus