Clone BS28181 Report

Search the DGRC for BS28181

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:281
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCG13438-RA
Protein status:BS28181.pep: gold
Sequenced Size:695

Clone Sequence Records

BS28181.complete Sequence

695 bp assembled on 2012-03-05

GenBank Submission: KX800460

> BS28181.complete
GAAGTTATCAGTCGACATGAAGTCGTTCGGGAACTTGACCTTTGGCCTAC
TCGTCATCCTTATAGCAAGCTTTACTGTCGGCCTAGAGGCTCGTCGCCTG
GCTTTGCGTCCATTGACAGGAAGGGAACTGAGAAGAGCTCTTAGGGAATC
CGGATTCGATGAGGATTCTGCAGCTGGAAGATCAGTGGCGTCGGCGCTGT
CCGGACTCAGTGGATTCGCCCTGGGCATCACAAAGGGCATTGGTGGCTCA
CTGCTGTTCGATGTGGTCACCTCGAATGTGACCATTGATTACATTACCAG
TCTGCTGAACTCCACTGCCTCATCGTCGACTTCAAGCAGCAGTGGAACTG
CACAGGAGATCTGTTTCAACAGTCGCAGTGCCGACGGTGAGGTGATTAAC
GGCAGGAGTAATGGCTTCAATGACATGGATGATGGAGCAGATCTCGACGG
CGAGTGGAGACAGACTACCAGTGGCACGGGCACGGGCTCTGTTACTGGCA
CTGGCACTGAGACAGGAACTACCACCTCCTCGTCTTCCAACGGCCTCACC
TGCATTGTCCTGAGCAAGGAGGGTTCCCGTCGCAGGCGCCAGTTGCGAAT
CCAACCAGGAACGTTGAGATCTGTTTATCCTAAAAGCCATCGGCAGACCC
TGAAAAAGTACCGCCGGCATAGGGTTTAGAAGCTTTCTAGACCAT

BS28181.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG13438-RA 663 CG13438-PA 1..663 17..679 3315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG13438-RA 834 CG13438-RA 42..704 17..679 3315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:04:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20693019..20693609 89..679 2955 100 Plus
2R 25286936 2R 20692870..20692942 17..89 365 100 Plus
Blast to na_te.dros performed on 2014-11-28 05:04:32 has no hits.

BS28181.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:43 Download gff for BS28181.complete
Subject Subject Range Query Range Percent Splice Strand
CG13438-RA 1..663 17..679 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:20 Download gff for BS28181.complete
Subject Subject Range Query Range Percent Splice Strand
CG13438-RA 42..704 17..679 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:03:40 Download gff for BS28181.complete
Subject Subject Range Query Range Percent Splice Strand
CG13438-RA 42..704 17..679 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:03:40 Download gff for BS28181.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20692870..20692942 17..89 100 -> Plus
2R 20693020..20693609 90..679 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:20 Download gff for BS28181.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16580375..16580447 17..89 100 -> Plus
arm_2R 16580525..16581114 90..679 100   Plus

BS28181.pep Sequence

Translation from 16 to 678

> BS28181.pep
MKSFGNLTFGLLVILIASFTVGLEARRLALRPLTGRELRRALRESGFDED
SAAGRSVASALSGLSGFALGITKGIGGSLLFDVVTSNVTIDYITSLLNST
ASSSTSSSSGTAQEICFNSRSADGEVINGRSNGFNDMDDGADLDGEWRQT
TSGTGTGSVTGTGTETGTTTSSSSNGLTCIVLSKEGSRRRRQLRIQPGTL
RSVYPKSHRQTLKKYRRHRV*

BS28181.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13438-PA 220 CG13438-PA 1..220 1..220 1096 100 Plus