Clone BS28182 Report

Search the DGRC for BS28182

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:281
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptCG13046-RB
Protein status:BS28182.pep: full length peptide match
Sequenced Size:578

Clone Sequence Records

BS28182.complete Sequence

578 bp assembled on 2012-03-05

GenBank Submission: KX805304

> BS28182.complete
GAAGTTATCAGTCGACATGGCGCCCAATTTGACTTGTGTATGGATTACTC
TGCTGCAACTCATGAGCTTGGCTCTGGCCGATGTCTCACACCTGGATTAC
TCGATAGCACCCAGCACCCAGCTGGGTTACTATCACTATCCCGCTCCCAA
CAGGCCAGCCGTGCAGCGGAGCCAGAGGAACCAGTACCAACAGAACCAGC
AGTATCCCCAAGTGGCACGACAGTTTGCCGAGCCCGCCTTGGAGCATGCC
GCCTTCACCCAGGCTCTGACCAGCCAGGGTTACGTATTTGGAGCACCGTC
GTCTGCCCTCCAGGTGGCTCCCCCGGCACCACAGCCCCAGCAGGTGGCCA
GAGTATCATCTGCTGCGGGATCGGCCACAGGTCGTTCCATATCCTCCGCT
TCCGTGGATGCCAACTCGCTGAATCTCAAGCTGCCAGTGCCCTTTGGCAT
TGCTCCACTGAATGTGGCGCAACTTCCGCTGCAGGCTGGGGCACCATATG
CCAGTGTGCCCAGAACCACGGGGCTAACCTCCTATGGAACACCGCAGATC
CAGAGGCGCTAGAAGCTTTCTAGACCAT

BS28182.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG13046-RB 546 CG13046-PB 1..546 17..562 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG13046-RB 781 CG13046-RB 101..646 17..562 2730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16287715..16288248 562..29 2670 100 Minus
Blast to na_te.dros performed 2014-11-28 05:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6845..6892 164..211 105 68.8 Plus

BS28182.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:41 Download gff for BS28182.complete
Subject Subject Range Query Range Percent Splice Strand
CG13046-RB 1..546 17..562 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:59 Download gff for BS28182.complete
Subject Subject Range Query Range Percent Splice Strand
CG13046-RB 101..646 17..562 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:02:37 Download gff for BS28182.complete
Subject Subject Range Query Range Percent Splice Strand
CG13046-RB 101..646 17..562 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:02:37 Download gff for BS28182.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16287715..16288248 29..562 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:59 Download gff for BS28182.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16280815..16281348 29..562 100 <- Minus

BS28182.pep Sequence

Translation from 16 to 561

> BS28182.pep
MAPNLTCVWITLLQLMSLALADVSHLDYSIAPSTQLGYYHYPAPNRPAVQ
RSQRNQYQQNQQYPQVARQFAEPALEHAAFTQALTSQGYVFGAPSSALQV
APPAPQPQQVARVSSAAGSATGRSISSASVDANSLNLKLPVPFGIAPLNV
AQLPLQAGAPYASVPRTTGLTSYGTPQIQRR*

BS28182.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG13046-PB 181 CG13046-PB 1..181 1..181 923 100 Plus