BS28184.complete Sequence
872 bp assembled on 2012-03-05
GenBank Submission: KX803145
> BS28184.complete
GAAGTTATCAGTCGACATGAAGCTATTTGGACTGCTCTGCGTAATGTTAG
TACTTCAAGAAAGTACTCTGGCTGTTGTACAAAACGGATTTGCGTTCAAG
ACGTCCTTATGCGAGGGTAAAAATGGTGGACTCTTGCCCATGTTTGGATC
CTGTAAAGGATATTACGTGTGTGCTGATGGAAACGCTGTGACCGGAACTT
GTGAAAAGAATACGTTGTTTAATCCTTTAACGTTGCACTGCGATGATCCT
GACAATGTGGATTGCATTTTCGATGGCAAGGATAATATTGTTGACGACAC
GTCAAGTTCTGAAAGCGACGAAGACGATGATGAGGAAATGGCCAAAACTG
ATCCTCCCGTTACTGTCAAAGCGACGAAAAAGCCGCGTCCTACAACCCTT
GACAAAATGTGTGCTGGCAAGAAGGATGGAGTGATGCTTACAAAGAACGG
GTCCTGCCAGGAATATTATGTCTGCAAAGCAAAAAAGCCCCATCTGCGCT
CTTGTCCTGACAAACAACATTTTAGTCCAACTCGTCGCATTTGCATGAAG
GCCTCAGAAGCCAAGTGTTCGGGTGGAACCCGAGAAAATAAAGAATCAGA
TGGTCCTGCCACCACGGGAGGAGTGTGTTCAGATGAAAAGGAAAACTCTC
TTGTTGCTCATCGCAGCGATTGTGGCAAGTTTATGCTCTGCAGCAACATG
ATGTTTTTGGTAATGGACTGCCCAACTGGCCTGCATTTCAATATAGCCAC
ATCACGATGCGATTATCCCAAAATTGCAAAATGCCAGACGAAGCTAAATG
AAAGCAAATCCAAGTCAAAGAAACCTGTGCGCAAGTCAAAAAAACGTCGA
TTCTAAAAGCTTTCTAGACCAT
BS28184.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:02:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| obst-G-RA | 840 | CG9781-PA | 1..840 | 17..856 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:02:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| obst-G-RA | 962 | CG9781-RA | 25..864 | 17..856 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:02:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11952399..11953176 | 856..79 | 3875 | 99.9 | Minus |
| 3L | 28110227 | 3L | 11953228..11953293 | 82..17 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:02:34 has no hits.
BS28184.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:41 Download gff for
BS28184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| obst-G-RA | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:05 Download gff for
BS28184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| obst-G-RA | 25..862 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:02:55 Download gff for
BS28184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| obst-G-RA | 25..862 | 17..854 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:02:55 Download gff for
BS28184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11952401..11953172 | 83..854 | 100 | <- | Minus |
| 3L | 11953228..11953293 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:05 Download gff for
BS28184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11945501..11946272 | 83..854 | 100 | <- | Minus |
| arm_3L | 11946328..11946393 | 17..82 | 100 | | Minus |
BS28184.pep Sequence
Translation from 16 to 855
> BS28184.pep
MKLFGLLCVMLVLQESTLAVVQNGFAFKTSLCEGKNGGLLPMFGSCKGYY
VCADGNAVTGTCEKNTLFNPLTLHCDDPDNVDCIFDGKDNIVDDTSSSES
DEDDDEEMAKTDPPVTVKATKKPRPTTLDKMCAGKKDGVMLTKNGSCQEY
YVCKAKKPHLRSCPDKQHFSPTRRICMKASEAKCSGGTRENKESDGPATT
GGVCSDEKENSLVAHRSDCGKFMLCSNMMFLVMDCPTGLHFNIATSRCDY
PKIAKCQTKLNESKSKSKKPVRKSKKRRF*
BS28184.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:49:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| obst-G-PA | 279 | CG9781-PA | 1..279 | 1..279 | 1513 | 100 | Plus |
| CG4835-PB | 1224 | CG4835-PB | 397..629 | 35..248 | 222 | 26 | Plus |
| CG7248-PA | 796 | CG7248-PA | 541..762 | 29..256 | 198 | 25.7 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 1311..1512 | 28..255 | 193 | 26.3 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 1314..1447 | 132..265 | 186 | 29.4 | Plus |
| CG4835-PB | 1224 | CG4835-PB | 273..530 | 32..248 | 184 | 22.8 | Plus |
| CG33986-PB | 277 | CG33986-PB | 56..271 | 46..261 | 181 | 24.8 | Plus |
| CG7248-PA | 796 | CG7248-PA | 59..257 | 29..254 | 171 | 23 | Plus |
| CG7248-PA | 796 | CG7248-PA | 136..338 | 35..248 | 157 | 25.3 | Plus |
| CG7248-PA | 796 | CG7248-PA | 373..590 | 37..250 | 152 | 21.5 | Plus |
