Clone BS28188 Report

Search the DGRC for BS28188

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:281
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG13226-RA
Protein status:BS28188.pep: gold
Sequenced Size:746

Clone Sequence Records

BS28188.complete Sequence

746 bp assembled on 2012-03-05

GenBank Submission: KX803347

> BS28188.complete
GAAGTTATCAGTCGACATGTATCTACGCGCGCGTTTGGCTCTGCTGAGCC
TTCTCTTCCTGATGGTCTCCGGTCAGAGGAGTAAGTCCCGGAGTGAACGT
CCTCAAGGCAGGACCTTGGGATTATTGACTCCCCTTTTACTGGGAGGTGG
TGGACCGCTCTTCGATGTTCCCCTGCCCGCAGGACCACCCATCAGACCAG
GTGGTGGTTCATCCTCCGCAGCCGGAGGAGGCACCCAATCGGACTCATAC
TACGGCGGCAGTTATCCTAGCTACGGATACAGGCCCAACTATGGATACGG
ATATCCCAACTACGGTTATAACTATGGATACCCGGTCTTCGGCTACGGCT
ATGGGCAGAACTACTACAGACCCAGCTACTACAATTATGGTGGATACCAG
AGACCGCAGCCCTATTATGGTTACCGGCCCACTTATAGCTCCAGTGGAAC
TGCCGGATCAGGCGGTTATCCCTCATACAGCAGTTCAGCTGTCATCTCAA
GCTCTCCAACAAATTCGGCCGTTGGTTCGGCATCAGGAGCAGGAGCAGTA
TCCGGAGGTGGAACCCCACAGCTATCCACCGCTCAGCAAGCCCAGTTAGC
CGGTCTTTTGGGTCAGGCCCTTGGCAGCAGTCTACGCCCTCTTCTCGCCA
ATGGGGGCGGGGCAGCTGGAGCGACAGGAGCGGGAGCAAATCCACAAGCG
CTGAGCGGTCTACTCAGTCTGCTTGGCTAGAAGCTTTCTAGACCAT

BS28188.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG13226-RA 714 CG13226-PA 1..714 17..730 3570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:17:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG13226-RA 953 CG13226-RA 40..758 13..731 3580 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11244286..11245004 13..731 3580 99.9 Plus
Blast to na_te.dros performed on 2014-11-28 05:17:04 has no hits.

BS28188.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 17:15:23 Download gff for BS28188.complete
Subject Subject Range Query Range Percent Splice Strand
CG13226-RA 1..714 17..730 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:04 Download gff for BS28188.complete
Subject Subject Range Query Range Percent Splice Strand
CG13226-RA 37..750 17..730 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:07:39 Download gff for BS28188.complete
Subject Subject Range Query Range Percent Splice Strand
CG13226-RA 44..757 17..730 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:07:39 Download gff for BS28188.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11244290..11245003 17..730 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:04 Download gff for BS28188.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7131795..7132508 17..730 100   Plus

BS28188.pep Sequence

Translation from 16 to 729

> BS28188.pep
MYLRARLALLSLLFLMVSGQRSKSRSERPQGRTLGLLTPLLLGGGGPLFD
VPLPAGPPIRPGGGSSSAAGGGTQSDSYYGGSYPSYGYRPNYGYGYPNYG
YNYGYPVFGYGYGQNYYRPSYYNYGGYQRPQPYYGYRPTYSSSGTAGSGG
YPSYSSSAVISSSPTNSAVGSASGAGAVSGGGTPQLSTAQQAQLAGLLGQ
ALGSSLRPLLANGGGAAGATGAGANPQALSGLLSLLG*

BS28188.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG13226-PA 237 CG13226-PA 1..237 1..237 1251 100 Plus
CG13285-PA 198 CG13285-PA 58..171 93..203 156 37.7 Plus
CG13285-PB 154 CG13285-PB 58..144 93..181 152 42.9 Plus
Edg91-PB 151 CG7539-PB 1..142 9..181 149 35.3 Plus
Edg91-PA 159 CG7539-PA 9..150 9..181 149 35.3 Plus