BS28189.complete Sequence
833 bp assembled on 2012-03-05
GenBank Submission: KX804766
> BS28189.complete
GAAGTTATCAGTCGACATGATGGCTGTCCGTTTGTCTCTGATTTGGCTGC
TTCTGCTGGGCACTTCCATTGACGTCACGCGCGGAAAGCGTTTGGACAAT
CGTAAACTTTTGGACAATCGCATTGTGGGTGGCCAGGAGGCGGAGGACGG
AGTGGCACCTTATCAGGTGTCCATTCAGACCATCTGGAAAACCCACATCT
GCAGCGGAGTCATTCTCAACGAACAGTGGATCCTCACCGCGGGTCATTGT
GCACTGGACTTTAGCATCGAGGATCTAAGGATTATAGTGGGCACGAATGA
TCGTCTGGAGCCAGGACAGACCTTATTTCCGGACGAGGCCCTAGTCCATT
GCTTGTACGACATACCCTATGTCTACAATAATGACATAGCGTTGATCCAT
GTCAACGAGTCGATTATATTCAATGATCGCACCCAGATCGTTGAGTTGAG
CCGAGAGCAACCTCCGGCGGGTTCCACGGTCACTCTGACGGGATGGGGTG
CTCCGGAAAGTAGCTATCCCACAGTGCAATATCTGCAGACCCTCAACCTG
ACCATCATCGCACACGAGGAGTGCAGAGAGAGATGGGACTTTCACGATGG
CATCGACATCGGTCATATTTGCACCTTTACGCGAGAGGGCGAGGGTGCCT
GCTCCGGAGACTCCGGTGGTCCACTGATGTGGGAGGGCAAACTGGTGGGC
CTGGTCAACTGGGGCAGAGCCTGCGGCGTCGGCATGCCAGACATGTATGC
CAACACGGTTTACTATCAGGATTGGATCCGCAGGACTCATTCAGGATGCA
AGAATCGTGTTAACTAAAAGCTTTCTAGACCAT
BS28189.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:23:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4053-RB | 798 | CG4053-PB | 1..798 | 20..817 | 3990 | 100 | Plus |
| CG31265-RA | 801 | CG31265-PA | 595..716 | 611..732 | 205 | 77.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:23:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4053-RB | 925 | CG4053-RB | 40..843 | 17..820 | 4020 | 100 | Plus |
| CG31265-RA | 909 | CG31265-RA | 629..750 | 611..732 | 205 | 77.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:23:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17131429..17132159 | 747..17 | 3655 | 100 | Minus |
| 3R | 32079331 | 3R | 17131293..17131368 | 820..745 | 380 | 100 | Minus |
| 3R | 32079331 | 3R | 17128840..17128961 | 611..732 | 205 | 77.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:23:29 has no hits.
BS28189.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 18:22:45 Download gff for
BS28189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4053-RB | 1..796 | 20..815 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:31 Download gff for
BS28189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4053-RB | 40..838 | 17..815 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:10:11 Download gff for
BS28189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4053-RB | 40..838 | 17..815 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:10:11 Download gff for
BS28189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17131298..17131368 | 745..815 | 100 | <- | Minus |
| 3R | 17131432..17132159 | 17..744 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:31 Download gff for
BS28189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12957020..12957090 | 745..815 | 100 | <- | Minus |
| arm_3R | 12957154..12957881 | 17..744 | 100 | | Minus |
BS28189.pep Sequence
Translation from 16 to 816
> BS28189.pep
MMAVRLSLIWLLLLGTSIDVTRGKRLDNRKLLDNRIVGGQEAEDGVAPYQ
VSIQTIWKTHICSGVILNEQWILTAGHCALDFSIEDLRIIVGTNDRLEPG
QTLFPDEALVHCLYDIPYVYNNDIALIHVNESIIFNDRTQIVELSREQPP
AGSTVTLTGWGAPESSYPTVQYLQTLNLTIIAHEECRERWDFHDGIDIGH
ICTFTREGEGACSGDSGGPLMWEGKLVGLVNWGRACGVGMPDMYANTVYY
QDWIRRTHSGCKNRVN*
BS28189.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:49:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4053-PB | 265 | CG4053-PB | 1..265 | 2..266 | 1434 | 100 | Plus |
| CG31265-PA | 266 | CG31265-PA | 36..260 | 35..260 | 597 | 50 | Plus |
| CG31269-PB | 273 | CG31269-PB | 3..261 | 7..260 | 558 | 44.6 | Plus |
| CG5255-PA | 273 | CG5255-PA | 28..252 | 34..258 | 531 | 47.6 | Plus |
| CG5246-PA | 272 | CG5246-PA | 39..263 | 33..256 | 525 | 43.6 | Plus |
