BS28193.complete Sequence
3851 bp assembled on 2012-04-11
GenBank Submission: KX801890
> BS28193.complete
GAAGTTATCAGTCGACATGGGTACAACAAAGGAGCGAAGAGAGCAAAGCG
AGGGCGACGCCGCCACCACCCACTTAACAACAACAGCAACAGCAACAACA
GGAGCAATAGTAGCAGCAGGAGTTACTACTACGCTGCCAGCTACAAAAAC
AACAACCACAGCGGCAGACACGAGCACGACGAATGCCGCCAAAAAGATTC
GCCGCACCTTCTCCATGCCACGCAATCCCTTCCGCTGGACGCGTAAGTTC
AAAACGGCAGTGGCCGTTACGTCGTCCGCGGGAGCGGAAAACGATAACGA
AAGCGGCAAGAATAACGGGGCCAGGGAGCGGCGTGGCAGCCACACGGCGA
TCTCGTCCTGCGTGGGAGGTGGGCGTGGCAGGAGCGGGAGCATTGTGTCG
CTCAGCAGCTACGAGGCCCCATTCATTTCGTCCACCAACAACAACACAAC
CACCGCCAGCAATGGAAACAACAACAACAGTAGCAGTAGCAACATCAACA
GCAAGCGGACACGTGCTCTGCGCCGTTCGTCCTTCAGGAAGTTTCTCAAC
CGGATCGCCCAGCACCTGAGCTCAACGGTTAATGTCGTGTCGGAGGAGAA
GCACTCGCCTGCGAATCGCATCGCCTTCATTGAAATTGTGCCATTCTACA
CCGGATGCTGGCGCAGAAAAGAGGCGAACAAACATGGTCAGCCATCGGTT
TCGGGCTCTTCGTCGGGCGGCGGAGGAGGAGCAGGAGGACCAGGCGGCGG
GGAGAGAGTGCCCCCCATCGGAGGCTATCAGTGGCCGGCGGATCAGACTC
CAGGTGTAATGGGATTGAAGAACCACGGGAACACTTGCTTTATGAACGCG
GTGCTGCAATGCCTCAGTCACACAGACATACTGGCCGAGTACTTTGTTTT
AGATCAGTACAAGGCTGACCTCAAGCGACGCAACAAGATTAACTCGCGAA
AGTTCGGCACTAAGGGAGAGCTCACCGAGCAGCTGGCCAACGTGCTGAAG
GCGCTGTGGACTTGCAAGAACGAGAGTGATCACAGCACCAGCTTTAAGGC
AGTGGTAGATCGGTACGGAACGCAGTTCCGCAGCTCGACGCAACACGATG
CCCAGGAGTTTCTTTTTTGGTTGCTTGACAAGGTGCACGAGGACCTCAAC
ACAGCCAGCAAGCGGCGCTACAAGAGCCTCAAGAACTCGTACGGCCGTTC
GGACGAGGTGATCGCCGCCGAGACGCTGGCCAATCACATCCGGTGCAACA
ACAGCTTCGTCCAGGCCGTGTTCCAGGCCCAGTTTCGCTCATCGCTTACC
TGCCCGCGCTGCGAAAAGCAGTCAAACACATTCGACCCCTTTCACTGCAT
CTCCGTGCAGCTGCCGCAGCTCACGCAGCAGACGATATTTGTCACTGTAG
TCTACATGACGCGGCTCCCACGTCAGGTGCGGATGGGCCTGCGAGTTCCA
GCCGGATCGCCAATAGTAGCGCTTCGAGAGCAGCTTCAGGCGGACACGGG
TATCGAGGGATCGCGAATGGTCCTGGTGGACTTAAACGCCGAAGGATTCA
CCCGCGTTTTTTACGACACGCAACCCGTAGAGACGCTATCTAGCATTGAA
ACAATTTACTGCATCGAGGTGCCGGCGGCAACTCCTGTTGCCAAGGCTGC
TACTCCTTCAGAGACGGGGGATAAGTCTGCTCCAACAGCAGTGACTCCAT
CTCCTGCTGCAGCTCAATCGCAGGCGGACCTGTTGCTCCTAGTGGCCAAC
GTATACCGAGCGAAGGATGGCGCGGATATAACCCGCTTTGGAGCCCCCTT
CAGCATGAAGGCACCTCGTGACTGCTCATACCAGGATCTGCAGAAACGAA
TGCTCCGCGAAATGGCGCCGCTGCTCAAGCCAGAGGTGTTCTCCTATGCC
ACCCCACTGGCCGAGATGTTCCGTATTCGGCTGCAAGACCCATCCGCAGA
CCCTGATACCTATTTGGAGCAAGTGGAGCACCCGTTGCTTACCGAAATGA
TCGACATGGCGCTTTCCGTGCTTTCCTCCGAGGCAGGACCCCAGCATATA
AAGCTCCTTTTGGAGTGGAGTTCACCCGAGGCACACTTTATCAGTAAACA
GCAGGACACGGAAGAAGCCGTCGTGGAGCACGAGAGCGTTGCTCGTCTAA
GTGCCAGCAAGCCGAGCGACACCGCTGCGCTGACTTTGGAGCAGTGCCTG
GAGCACTATACCAAGGCAGAGACTCTGAGTGCCGAGGATGCCTGGCGCTG
TCCACACTGCCAGCAATACCTTCCAGTTGTGAAGACGCTTGGTCTGTGGT
CGCTGCCCGACATCCTAGTAGTGCATTTCAAGCGCTTCCGGCAACATCAA
TCTAAAGGTCCGCAAGCGGCTAAGCTGACAACAATGGTCAAGTTTCCGCT
GACCGCCTTCGACATGTCACCGCACTTGGCACGTGGCGTGCATGAAAGCG
CCAGCAGCTCGCTGGGTATGGGAACGGGCATTGGACTTGGACTCGGGCTG
GGCTCGAATCCCTGGAAGAAAGCTCGTTCCGTCGACTCGCGGTCCTCCAC
ACTTAACTCGCGCTGTGACGCAAAGGATACGCGGTACGACCTTTACGCAG
TGTGCTACCATCAGGGAGATACATTGGAAACAGGGCATTATACAGCTGCC
TGCAAGAATCCTTACGACCGTCAGTGGTATAAGTTCGACGACCAGCGAGT
GAGCAAGGTGCCTGAGGACGACATTGAGCAGGACATAATCAATAATGAGG
CATACATGCTCTTCTACCAGCGACGCAGTGTAGATGCAGGCGAGTGTTCC
GGTTCCAGTTCGAACTCCGGAGATCACTGGGTATCGCGAATTGCGCCAGC
CTCATCATCGTCCGCATCATCGACGTCAGGAAAGGAGAGGGAGCCGGTTA
AGTTGGAGGAAAACACAGAATCTCCTGCGGCAGTAGAAGTAACGGAGAAG
GCTCAGTCCAAGCCGGTGGACATAGTTTGCCAGGATAAGGCGAAAGGTAC
TGCAGACGGCCCAGACGCTGATCAAGAACAGACAACTGTTCCACATGATT
TACAAATTGAGGAACTGGCATTCGCGGATGCAGATGTAGACACCAGTTTA
GGAGAGACCATCAAGGCGGAGGTAAATCTAGCGGCTAAGGATGAACCCAA
AAAGGTGGAGGTAGAGGAAGCCACGCCTATATTTGCCATGGATGAAGACG
GTTCCGAAGCTAGACAGGAGAAGAAGGAGGAATGCGTTAAGAAGGAAGAC
GAACTCTCCGAAGCCCCAGATGTGAGCGAACTAACCGCCGAGTCCAAGAC
CAATGGCCACGTGAGCTCTTCGTCCAGCTCTTCCTCCTCGGAAAGCTCGC
TATCGTCCCGCTCCTCGCCGCGATCATTGAGTACTTCAGTCACAGCTGCA
TCTACTCTGCAGAGCAAGTTCAACGGCCACATGAGCGCCGCTCCAGCTCT
TTTCAATGGAAATGGAAATACGTCACAGCTCTCGTCCAGCTTGCAACTAT
CCCGGCATGTGCTGCACAACCATCAATGGCACGGATCTAGGAGCAGCGTG
TCAGCTGTAGAGAATGCTACGCAACATCAACAGCAGCAGGCGGCGGCCAG
TCTGAGCCTTCGTCATTCGTTTTCCACAAGTTCAAATTACACGGAGACAC
TATCATCCTTGCTACGCAAATCAGCAAATACATGCAGCAAGGACACGCTG
CTGTTTATCGACCAACAGAGTCACCATCATACAGCCGGACTGATCGAAGA
TGACGATGATTCATACATGGGCAGGTCCCTTTGGATATCGCCCGTAACGC
CACACAAACTCATCACTGTTTCGCCCAAGAATTAGAAGCTTTCTAGACCA
T
BS28193.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:36:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30421-RA | 3819 | CG30421-PA | 1..3819 | 17..3835 | 19080 | 100 | Plus |
| CG30421-RC | 3735 | CG30421-PC | 573..3735 | 673..3835 | 15800 | 100 | Plus |
| CG30421-RB | 3735 | CG30421-PB | 573..3735 | 673..3835 | 15800 | 100 | Plus |
| CG30421-RC | 3735 | CG30421-PC | 1..573 | 17..589 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:36:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30421-RA | 5225 | CG30421-RA | 518..4338 | 16..3836 | 19090 | 100 | Plus |
| CG30421-RC | 4550 | CG30421-RC | 1091..4254 | 673..3836 | 15805 | 100 | Plus |
| CG30421-RB | 5141 | CG30421-RB | 1091..4254 | 673..3836 | 15805 | 100 | Plus |
| CG30421-RC | 4550 | CG30421-RC | 518..1091 | 16..589 | 2870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:36:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24753311..24755128 | 1182..2999 | 9075 | 99.9 | Plus |
| 2R | 25286936 | 2R | 24755184..24755977 | 2995..3788 | 3955 | 99.9 | Plus |
| 2R | 25286936 | 2R | 24744266..24744839 | 16..589 | 2870 | 100 | Plus |
| 2R | 25286936 | 2R | 24752964..24753235 | 912..1183 | 1360 | 100 | Plus |
| 2R | 25286936 | 2R | 24752669..24752911 | 672..914 | 1215 | 100 | Plus |
| 2R | 25286936 | 2R | 24751299..24751384 | 589..674 | 430 | 100 | Plus |
| 2R | 25286936 | 2R | 24756037..24756089 | 3784..3836 | 265 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 04:36:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2339..2812 | 23..503 | 245 | 54.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2320..2463 | 76..208 | 228 | 65.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1023..1163 | 28..165 | 228 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..6939 | 24..191 | 223 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6747..6879 | 33..166 | 217 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6864 | 63..215 | 213 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6890 | 64..208 | 210 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6751..6909 | 23..176 | 205 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6865 | 30..167 | 199 | 62.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1058..1157 | 75..180 | 192 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2428 | 76..166 | 185 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2788..2932 | 47..194 | 184 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6842 | 78..208 | 176 | 62.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1502..1605 | 55..155 | 170 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6820..6915 | 23..118 | 155 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2571..2659 | 31..118 | 145 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2989 | 79..479 | 144 | 53.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1104..1179 | 76..155 | 140 | 68.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1546..1587 | 76..117 | 138 | 81 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2767..2908 | 47..196 | 137 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2449..2549 | 76..176 | 136 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2765..2891 | 63..182 | 133 | 59.1 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3292..3379 | 76..155 | 133 | 67 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5640..5692 | 67..120 | 132 | 74.1 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 7095..7147 | 67..120 | 132 | 74.1 | Plus |
| TART-A | 13424 | TART-A 13424bp | 9892..10005 | 36..149 | 128 | 61.5 | Plus |
BS28193.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 12:37:26 Download gff for
BS28193.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30421-RA | 456..4274 | 17..3835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:07 Download gff for
BS28193.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30421-RA | 519..4337 | 17..3835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:32:40 Download gff for
BS28193.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30421-RA | 519..4337 | 17..3835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:32:40 Download gff for
BS28193.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24744267..24744839 | 17..589 | 100 | -> | Plus |
| 2R | 24751300..24751383 | 590..673 | 100 | -> | Plus |
| 2R | 24752671..24752910 | 674..913 | 100 | -> | Plus |
| 2R | 24752966..24753235 | 914..1183 | 100 | -> | Plus |
| 2R | 24753313..24755125 | 1184..2996 | 99 | -> | Plus |
| 2R | 24755186..24755973 | 2997..3784 | 100 | -> | Plus |
| 2R | 24756038..24756088 | 3785..3835 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:07 Download gff for
BS28193.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20631790..20632362 | 17..589 | 100 | -> | Plus |
| arm_2R | 20638823..20638906 | 590..673 | 100 | -> | Plus |
| arm_2R | 20640194..20640433 | 674..913 | 100 | -> | Plus |
| arm_2R | 20640489..20640758 | 914..1183 | 100 | -> | Plus |
| arm_2R | 20640836..20642648 | 1184..2996 | 99 | -> | Plus |
| arm_2R | 20642709..20643496 | 2997..3784 | 100 | -> | Plus |
| arm_2R | 20643561..20643611 | 3785..3835 | 100 | | Plus |
BS28193.pep Sequence
Translation from 16 to 3834
> BS28193.pep
MGTTKERREQSEGDAATTHLTTTATATTGAIVAAGVTTTLPATKTTTTAA
DTSTTNAAKKIRRTFSMPRNPFRWTRKFKTAVAVTSSAGAENDNESGKNN
GARERRGSHTAISSCVGGGRGRSGSIVSLSSYEAPFISSTNNNTTTASNG
NNNNSSSSNINSKRTRALRRSSFRKFLNRIAQHLSSTVNVVSEEKHSPAN
RIAFIEIVPFYTGCWRRKEANKHGQPSVSGSSSGGGGGAGGPGGGERVPP
IGGYQWPADQTPGVMGLKNHGNTCFMNAVLQCLSHTDILAEYFVLDQYKA
DLKRRNKINSRKFGTKGELTEQLANVLKALWTCKNESDHSTSFKAVVDRY
GTQFRSSTQHDAQEFLFWLLDKVHEDLNTASKRRYKSLKNSYGRSDEVIA
AETLANHIRCNNSFVQAVFQAQFRSSLTCPRCEKQSNTFDPFHCISVQLP
QLTQQTIFVTVVYMTRLPRQVRMGLRVPAGSPIVALREQLQADTGIEGSR
MVLVDLNAEGFTRVFYDTQPVETLSSIETIYCIEVPAATPVAKAATPSET
GDKSAPTAVTPSPAAAQSQADLLLLVANVYRAKDGADITRFGAPFSMKAP
RDCSYQDLQKRMLREMAPLLKPEVFSYATPLAEMFRIRLQDPSADPDTYL
EQVEHPLLTEMIDMALSVLSSEAGPQHIKLLLEWSSPEAHFISKQQDTEE
AVVEHESVARLSASKPSDTAALTLEQCLEHYTKAETLSAEDAWRCPHCQQ
YLPVVKTLGLWSLPDILVVHFKRFRQHQSKGPQAAKLTTMVKFPLTAFDM
SPHLARGVHESASSSLGMGTGIGLGLGLGSNPWKKARSVDSRSSTLNSRC
DAKDTRYDLYAVCYHQGDTLETGHYTAACKNPYDRQWYKFDDQRVSKVPE
DDIEQDIINNEAYMLFYQRRSVDAGECSGSSSNSGDHWVSRIAPASSSSA
SSTSGKEREPVKLEENTESPAAVEVTEKAQSKPVDIVCQDKAKGTADGPD
ADQEQTTVPHDLQIEELAFADADVDTSLGETIKAEVNLAAKDEPKKVEVE
EATPIFAMDEDGSEARQEKKEECVKKEDELSEAPDVSELTAESKTNGHVS
SSSSSSSSESSLSSRSSPRSLSTSVTAASTLQSKFNGHMSAAPALFNGNG
NTSQLSSSLQLSRHVLHNHQWHGSRSSVSAVENATQHQQQQAAASLSLRH
SFSTSSNYTETLSSLLRKSANTCSKDTLLFIDQQSHHHTAGLIEDDDDSY
MGRSLWISPVTPHKLITVSPKN*
BS28193.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:18:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30421-PA | 1272 | CG30421-PA | 1..1272 | 1..1272 | 6555 | 100 | Plus |
| CG30421-PC | 1244 | CG30421-PC | 1..1244 | 1..1272 | 6361 | 97.8 | Plus |
| CG30421-PB | 1244 | CG30421-PB | 1..1244 | 1..1272 | 6361 | 97.8 | Plus |
| CG8334-PD | 1693 | CG8334-PD | 651..941 | 236..536 | 427 | 33.9 | Plus |
| CG8334-PC | 1696 | CG8334-PC | 651..941 | 236..536 | 427 | 33.9 | Plus |
| CG8334-PD | 1693 | CG8334-PD | 1364..1480 | 680..805 | 172 | 34.1 | Plus |
