BS28194.complete Sequence
4064 bp assembled on 2012-04-30
GenBank Submission: KX802268
> BS28194.complete
GAAGTTATCAGTCGACATGGACTTGGTGGACATTGATCAGGTTTTGGACA
ATCTGGAACTGAGCATTGCCGCCGATGAGCAGCTGAGTAGAAATGCAGCG
GCAGCAGCAGCTGCAGGTGCAAATCCTGGCCGTTTTCTGGGCGACGGAGC
AAGTGCATCGATCAGTGGAGTTGGAGCTGGCGCCGGAGTATCGGGAGCTG
CGGGAGTAACACCAACACCGGCGTCTGGAAAGTCCTTTGTGGGCGTCTCT
CAGGTTTTCAACAGCCTGGATGACTACAGGGAAAATGTGAAGTCCTTGCA
GGTGGATGCCCAATTACCCAGCTACGACTGGCAAACGGAGGCGGAACACG
AAGACGACATCCACAAGTTCAGCGAACAGGCGTCCAAAAATAACGGCCAG
ACGATAGTATCGTCCTCCGAATCGCTGACCACCTCATCCTGTTCCACCTT
CTCGTCGGGTCCGTCGCCCGTGAGCAATGGCAGTCACTCGGAGGAGCTAG
CAACGCCCCCCGAAGATGAGAAAACGAGTGAAGTTCAGGTGGAGCCAAAG
GAACAGGATCAACAGCCGGAACAGGTCAAGCATGAGGACCAGCACCAAGA
TCAGGCTGTTCCACCGCCAACGCAATCCAAACAAACTGTAGAGGAGTTAG
CAGTTGGATTGTCATCCATCTCCATCACTGCGTCCGGCACAGAATCGCAA
TCCCTATTGCCGGAGGAGGTCACCGCATCGTCTGTTCTCGGGCAGGTCCT
CGAGGAGCTCTCGGAGGAATCGTCGCCCAGTAGAGAACCCGAAACCGAAA
TGACCAACGGCATAGATGTCCCATTGGCCAATTTACCAGCATCTGTTGCG
GAAGTACCGGTCCCTAAAGAGATGGAGCAGCCAGTACAAACGGAAGAAGA
GGATGTGGAGCTGCCACAGGAGCAGCATCCCAGGCGTAGTCAACCGTTGA
CCTTCTGCTCCACCATGGACGAGATCTCGGACACCGAACTGGACAGCATG
CTGCAAGAGATGGATGCAGATGACAACCAGGCGGACGATCAGCAAATGCC
CGACGATGAGAAATCCTGCTCCGCCTCGCCAGTGACCGAGGAGGAGTCGG
TGCGGATTCTATCCGATGAGCAGGAGACAACCTCGAACGATCAGATGAAC
GTGGACAACTTTTCGCAGGCCTCCACTGTGGAGTTTGCTGATCTGAAGCA
GCCGGAGTCCACACCAGTTACCGCGATGGGAGAAGATGTAGCCTCCAGTT
TCAGCAGCACGGAATCGGATTCCCTTTCGGGCAGGAAACTAGATGGCGAA
GTGGAGGTCGATCGAGAGCATGAAGATGCCAGCCTGGCAACGGATGCCCT
GGAAACCCAAGAGCAGCGCCCCCAGCGACCACAAACCCTAAATTTGAATG
GTTGCCAGGCAGAAAGTTCCACGCCATCTCAAGATGAAAATCCCGAAATT
CAACAGGAAACTTTGCAGCCTACCGAAGTCAGGGAAGGAGCGGCAGGAGT
AGGTGTTATACCCGGCGAGGATGACGAGGAAAGTCCTATCTACGAAGCAG
TGGGCTACAGCGATCCGCATGCCAATCTGGGCAAGGTGCCACCCATATGG
GTCCCGGATAACATGGCCGGGCAGTGCATGCAATGTCAGCAAAAGTTCAC
CATGATCAAAAGGCGTCACCACTGTCGCGCCTGCGGAAAGGTCTTGTGCT
CTGTCTGCTGTTCGCAACGATTCCGATTGGAATTCGCCACCGAACCCGAG
TCTAGGGTTTGTGTGCAGTGTTATATGATTCTCTCTGAGCGGCAGGCTAA
TGGATTGAATTCTGAGTCAGCACCGGGTTCGGCATTGCCGCCCACTCCCA
TTCGTTCGCCAAACCCAAACAATCCAATGGAATATTGTTCTACAATACCA
CCACACCGTCAGGTGGCCAACTCACCGGGTGCTCCGCCACCTAGTGTGAT
TGTGCCCGTGGGTGTGTTGAAAAAAACCGATGGCAGCTCCTCCAATTCCT
CCAGTTCGGATGGCCAAAAGGGCCAAAGAAAGCGAAAGAGTGTTATGTTC
AGTGATGGCATTGCGCCCGGCAGCGAACTGGCCAGTACCATGGAGCAGCA
ATGGGGCGAGTCCAAGCATTCTCGAAGGGGACTATCCAGGAGCGGCTCGG
GAGCTGGTCAAAAGCCACCAACGCCTGCGACAGAGGAGCCACCTCGCAGT
ATTGACACTAGCTCTACATTGGGCCTAGTGGCACAGCTATTCCGCGGTTC
CATTCCACCAAGCGCAGCGGCTGCCACATTATCGGCTACCGAGACAAGCG
CTGGTCGCTCCTCATCCCAATCGCAGGCACAGACCTCGCCGCGTCGCAAA
GCGGAATCATCACGGAATCGCAAACTACCGCCAAACGGAGATGCCCAAGG
CTGCTATCTGCCGCCGGAGGAGAACGGCCTGCCCCCAATTTGTATAAGCA
GCAAAGAGGGCGGTGAGGTGGACTACAAAGTAGTGCGCAACGATGGATCA
CTCCTAGATCGATTGCAGAACGAAACGCTCAAGTTCATTATAAAGAACAA
CTTCTTTGTGCTGGTCAAGATTGTTAACATGAGCTGCTGTATGAATCGAT
GGGTGCTGAACTTTACGACATCCGGACTACATCATATGGGCAGCGATGAG
TTGATCATTCTGCTGGAGATTAAGCAACCCAAGCAAGAAGAATACGTGAA
GGGGGAAGTCGCAATTCCGAAAGATTTGTTCCAGCACCTGTACGAGATCT
ACGTGGAGGCGGAGCATGCCCGGTCCGGCACCCATGAGTTGGCTTTCACC
AGTCCGCGAAATGCCAATTTTCTGGGTTCCCGGGAGCATGGAGGATTTAT
CTTTATTCGGCCAACGTACCAGTGCTTGCAGGGAGTTATTGTACCAGACA
ATCCGTATCTGGTTGGCGTGCTCATCCATAGACACGAGGTACCTTGGGCT
AAGGTGCTACCTTTGCGGTTGATCCTCCGCTTGGGTGCCCAGTATCGGTA
CTATCCCTGTCCATTGATCTCGGTGCGCGGCAGGGAGTCGGTGTATGGCG
AAATAGCTCAAACTATCATTAACTTTCTGGTGGATTTTCGCAACTATTCG
TACTCTCTACCGGCCATCCGAGGATTATATATCCACATGGAGGATAGGCA
GACGACGGTGATTATTCCAAAGTACCGCCAGCAGGATGTAATTAAGGCAA
TCAATAATGCTAGTGATCATATACTGGCTTTTGCTGGCAACTTCTCAAAA
GTGGCCGATGGTCACTTGGTTTGCATGCAGAATATCAACGACGATCGATC
CGAGATGTACTCCTACTCCACGCAGGCGATTAATATTCAGGGTCAACCCA
GGAAAATCACTGGAGCTAGCTTCTTTGTGCTAAATGAAGCCCTCAAGAGC
AGCAGTGGCTTGTCGGGTAAGTGCAGCATCGTGGAGGATGGCCTAATGGT
ACAGATTATGCCTGCCAAAATGGAGGAAGTGCGTCAGGCGTTGCGCAACC
AAAACGACATCGACATCGTCTGTGGACCCATTGACGCCACCGACGATCAG
AGTGAGATTGTAAGCATTAAGTGGGTGGACAATAATCGTGACATCAATGT
GGGGGTTAAGTCGCCCATTGATGACCAGCCCATGGATGGCATTTCAAACA
TGCGAGTGCTGAAATGGGCCAGCTTTAACTATTCCAATACCAACTATGCC
ATCCGCCTGAGTGATATCTACATTATTAAGTGCGAGGACTGGTATGCAAC
AAATGGTGGAAACTGTGAGGAGATAACACGGATTGCGGAGCAACTGGCTC
GCAGTGCCTCGATGGCTCTGCTGCCACTTCTCGATCTTTTAGCAGCTGCT
GGCATTAATAAGCTTGGCCTAAGAGCCACGCTCGATCAGGATAACGTGGG
CTATGAAGCCGGAGCTCGTGGCTCCAAGCTACCGCCGTTGTACATGAACG
CGCTGGACAACCATCTGATAGCCACGCTGCATGGCGAATCCTCCGGCATT
CAAGAGCCCATCATTCTAGAGCTGATCTTTTACATACTGAACGCTTGAAA
GCTTTCTAGACCAT
BS28194.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:32:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sara-RA | 4032 | CG15667-PA | 1..4032 | 17..4048 | 20160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:32:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sara-RA | 4621 | CG15667-RA | 187..4219 | 16..4048 | 20165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:32:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21483193..21484657 | 836..2300 | 7325 | 100 | Plus |
| 2R | 25286936 | 2R | 21485064..21486088 | 2580..3604 | 5125 | 100 | Plus |
| 2R | 25286936 | 2R | 21482224..21483043 | 16..835 | 4100 | 100 | Plus |
| 2R | 25286936 | 2R | 21484721..21485000 | 2300..2579 | 1400 | 100 | Plus |
| 2R | 25286936 | 2R | 21486329..21486497 | 3729..3897 | 845 | 100 | Plus |
| 2R | 25286936 | 2R | 21486553..21486705 | 3896..4048 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 21486143..21486270 | 3603..3730 | 640 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 12:32:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1c | 5443 | Rt1c RT1C 5443bp | 4304..4384 | 136..214 | 147 | 67.9 | Plus |
BS28194.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-30 10:04:10 Download gff for
BS28194.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sara-RB | 93..4123 | 17..4047 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:43 Download gff for
BS28194.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sara-RA | 188..4218 | 17..4047 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:06:35 Download gff for
BS28194.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sara-RA | 188..4218 | 17..4047 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:06:35 Download gff for
BS28194.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21482225..21483043 | 17..835 | 100 | -> | Plus |
| 2R | 21483193..21484657 | 836..2300 | 100 | -> | Plus |
| 2R | 21484722..21485000 | 2301..2579 | 100 | -> | Plus |
| 2R | 21485064..21486087 | 2580..3603 | 100 | -> | Plus |
| 2R | 21486144..21486270 | 3604..3730 | 100 | -> | Plus |
| 2R | 21486331..21486495 | 3731..3895 | 100 | -> | Plus |
| 2R | 21486553..21486704 | 3896..4047 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:43 Download gff for
BS28194.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17374058..17374209 | 3896..4047 | 100 | | Plus |
| arm_2R | 17369730..17370548 | 17..835 | 100 | -> | Plus |
| arm_2R | 17370698..17372162 | 836..2300 | 100 | -> | Plus |
| arm_2R | 17372227..17372505 | 2301..2579 | 100 | -> | Plus |
| arm_2R | 17372569..17373592 | 2580..3603 | 100 | -> | Plus |
| arm_2R | 17373649..17373775 | 3604..3730 | 100 | -> | Plus |
| arm_2R | 17373836..17374000 | 3731..3895 | 100 | -> | Plus |
BS28194.pep Sequence
Translation from 16 to 4047
> BS28194.pep
MDLVDIDQVLDNLELSIAADEQLSRNAAAAAAAGANPGRFLGDGASASIS
GVGAGAGVSGAAGVTPTPASGKSFVGVSQVFNSLDDYRENVKSLQVDAQL
PSYDWQTEAEHEDDIHKFSEQASKNNGQTIVSSSESLTTSSCSTFSSGPS
PVSNGSHSEELATPPEDEKTSEVQVEPKEQDQQPEQVKHEDQHQDQAVPP
PTQSKQTVEELAVGLSSISITASGTESQSLLPEEVTASSVLGQVLEELSE
ESSPSREPETEMTNGIDVPLANLPASVAEVPVPKEMEQPVQTEEEDVELP
QEQHPRRSQPLTFCSTMDEISDTELDSMLQEMDADDNQADDQQMPDDEKS
CSASPVTEEESVRILSDEQETTSNDQMNVDNFSQASTVEFADLKQPESTP
VTAMGEDVASSFSSTESDSLSGRKLDGEVEVDREHEDASLATDALETQEQ
RPQRPQTLNLNGCQAESSTPSQDENPEIQQETLQPTEVREGAAGVGVIPG
EDDEESPIYEAVGYSDPHANLGKVPPIWVPDNMAGQCMQCQQKFTMIKRR
HHCRACGKVLCSVCCSQRFRLEFATEPESRVCVQCYMILSERQANGLNSE
SAPGSALPPTPIRSPNPNNPMEYCSTIPPHRQVANSPGAPPPSVIVPVGV
LKKTDGSSSNSSSSDGQKGQRKRKSVMFSDGIAPGSELASTMEQQWGESK
HSRRGLSRSGSGAGQKPPTPATEEPPRSIDTSSTLGLVAQLFRGSIPPSA
AAATLSATETSAGRSSSQSQAQTSPRRKAESSRNRKLPPNGDAQGCYLPP
EENGLPPICISSKEGGEVDYKVVRNDGSLLDRLQNETLKFIIKNNFFVLV
KIVNMSCCMNRWVLNFTTSGLHHMGSDELIILLEIKQPKQEEYVKGEVAI
PKDLFQHLYEIYVEAEHARSGTHELAFTSPRNANFLGSREHGGFIFIRPT
YQCLQGVIVPDNPYLVGVLIHRHEVPWAKVLPLRLILRLGAQYRYYPCPL
ISVRGRESVYGEIAQTIINFLVDFRNYSYSLPAIRGLYIHMEDRQTTVII
PKYRQQDVIKAINNASDHILAFAGNFSKVADGHLVCMQNINDDRSEMYSY
STQAINIQGQPRKITGASFFVLNEALKSSSGLSGKCSIVEDGLMVQIMPA
KMEEVRQALRNQNDIDIVCGPIDATDDQSEIVSIKWVDNNRDINVGVKSP
IDDQPMDGISNMRVLKWASFNYSNTNYAIRLSDIYIIKCEDWYATNGGNC
EEITRIAEQLARSASMALLPLLDLLAAAGINKLGLRATLDQDNVGYEAGA
RGSKLPPLYMNALDNHLIATLHGESSGIQEPIILELIFYILNA*
BS28194.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:26:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sara-PA | 1343 | CG15667-PA | 1..1343 | 1..1343 | 6928 | 100 | Plus |
| CG6051-PD | 988 | CG6051-PD | 711..965 | 319..587 | 198 | 27 | Plus |
| CG6051-PC | 989 | CG6051-PC | 712..966 | 319..587 | 198 | 27 | Plus |
| CG6051-PB | 989 | CG6051-PB | 712..966 | 319..587 | 198 | 27 | Plus |
| fab1-PA | 1809 | CG6355-PA | 58..245 | 411..589 | 178 | 27.5 | Plus |
