BS28196.complete Sequence
2867 bp assembled on 2012-04-30
GenBank Submission: KX800810
> BS28196.complete
GAAGTTATCAGTCGACATGGATCTAGCAGATCAAATCGATGACTATATTT
GTTCGTTCGAGGGACTTGGTGACTTAACAATGGACTCCCTGGCCATCTTC
ATTTTCCTGTGGGCCGTTCTGGCCCTCTTCTCCGTGTGGCTAATCAAGCT
GCTCTACCACAAGTATCTCAACAAGGACAAGTCGGCCAGTGCGGCCAACA
GTCGCCAGACGAGCGTGGCCCCCACATCCGGATCACCCACGTCCGTCGCC
GGCAAGACGGAGAAACGTCTCTCGGAGCCGCGCGATCTTCTGGCCACCAA
GAGCAAGGTGGAAGGCTTGGACTTATCCAAGCCTCTGGCCGGCGCATCCG
GTGGTCGAGGACGTTCATCAGCATCGCCATTGAATACCGCTGGTGCAGCT
GCCGGCGGTCCACGTCGTCGGGTGGTGCGTCAGAGTTCCACTGGGCCAGA
GAATCGCAAGAAGCGCTATGTCCCACCGCCATCAAATGTCGTGGGTCCAG
AAACGAGCTCCGTCACCTGGACCAGCCAAGTGTTTCGCTGGCTTTATAGC
GACCTGGTCATCGTCAACGAGCTGCTCATGTCCTGGGTAATCGCCATCAA
CGACACGCTGCGCAAGTCCGTGGAGGAGCATGGAGTGGCCGTTGAAGTGG
TTCGAGTGCTACCCGACAGTCCTGCCCCCGGATTGAATAATATATTTTGT
AATTGCGATGAAAACAATCCCGCTGATATGCTCATCACCTTTGACTGCGA
TGCAATGCCGGTGCTGCAGGTGAAGACCTTCCGCCAAAAGTCGGGCAAGG
TGGAGACCTCCCACTACAAGGTCACCGTGTCTAGGTTCCGCGCCCGTATG
GCCATTCCCATGAACTACAACAGCCTCAAGGGTGAGATGCGAGTCGAGGG
CTATCCGGATGTTCGCATCGCGATGAACAGCGTGGGTGCCATCAAGGCAA
TGGATCAGGATGAACAGCAATTGCAGACGGTGATCAGCGACATCCTGACG
ACGGCTTTGCGCGACACCATCTATCCGGTGGACTTCTCCATTTACTCCAC
CTGTCCAAGGGCCGAGGTGGAGCCCCTGGACCTGCCCCACAACATGGAGC
AGCACATGGGTGGCGTGGGATTGAGGGATTCGCAACACATGGTTTCCGGC
CGTCGGCTGCTGGTGAAGATCGTCAAGGGCGATGGAATAAGGGATGCCCA
GAATCCCTACGTGGTCATCGAGATGGACGAGCCGGCCCAGAAGAATCAGA
CGGGCACTCAGCGCGGCGGCAAACCCTTCTGGGATGAGCATTTCCTCTTT
GAACTCTCCCCTCAATCAGCTGAGATCCTGTTCGAGGTGTATGACCATCC
GGTGATTGCCTCAGATCCGCCCAAGTTCCTGGGTCTCGGCCTGGTTGGAA
TCGATGAGCTGGCCGTTGGACCCGCATCCACTCAACTGTTGCAGCTGCAA
CCACGCCCCTATGAGACGCAGCCCGTTTCGGGAGCCATCACCGTGGACTT
TGTGTTCATTGAGGGTGCCGAAATCCCGGCGGGCGCACGTCCACAGCGTC
TCAAGGAGGCACTGCGTCTCAGTACACCGGCCATTAACGAACACATCCGA
AATGGAGCAGATCTGGCGGATGCAGCCGTAAGAGCTCTGCAGGATGGAGC
GCTCTCGAGCAGCGGAAGTGGCGGACAACCCAGCAAGAGCACTTTGATCA
TCCACAGTGTGCAGCGGAATTCAAGCAGCCCGAATGCATTTAAGGTCGAG
TTGAATAGAGATGGCCAAATCGAGGTGACCGATACGGCGACGGAATTGGA
TCAGGCAGTGGCTCAGGCATTCGAACGTGCCGCCAATGAGGCACAAACCG
AACTTGAGCTGGAGCTGGCCAAGGAGGAGAAGTCCAGCCAGCTGGGTGAG
CCTCTCATCGATTCAGGTAATGGCACCGTCAACGAGGAAAGCACCGCTGA
GTTTGGCCAGCCCAATGCCGCCTCATCGCCCAATGGCAGTAGTTACCACA
ACAACTATAGCCTCAATGGCAATGGTAACTCGAATGGCGCCGGTTCGGGC
GGATATAACAGTCTGCCACGAAACGGTGGTGCCCAGCAGCTGGCTCAGCA
ATCCGGATTATTGGAGGGCCATGACGTGGTCGATGATCGCGGGCGCAGCA
AAAAACGTAATTTCTTTGGCACCCTGAAGAAGCGGCTCAGCCGCTCCAAG
ACACGCACCCTCTCGGCCGATCAACCTAATAATAACAGTCATAAGTCACT
ATCAGCCACCAACTCGAATACAACAACAGCCACCGGATTCCCTCGAACAG
CCACCGGAACCCTCAATGGTGATTCTTCCCGTTCATTATCTGTCGATCGT
GCCACTCTGTCCAAAAGCAATTCACTTGGACCACGCATGGGCATTGGTCA
CTCCATCACCGACCACTCACGTCGCTCCTCAATTTCAGAATCCTCGGCCA
TCTCAGGCTTTTCCTCGGCTAGCAATAAAACCTACGTGCACGAGGCCTCC
ACCCTGGTGCTGGAGACCATCGAGAATGGCATAAAGCGCCACTTCATTGT
GCCTTTGGCCATCGCCCAGAGACCGCGCTGGCGTCGCAAGGGCACCAAGC
TGCACATCTACAACGATCACACCTTCATCGCCAAGCATTTGAGCGGAAGC
GGTCTGCAGTGCTCCATCTGTATGAAGTCCATCCCGCGGAGGCCCGGAAA
GCAGGGCTACGAGTGTCGCGACTGCCAGCTGATTAGTCACAAGCAGTGCC
ACATACGGGCACCACAAGCATGTCCCAATCCCACGGTGCTCTCCATGGAA
CTAACGTCATTTCCGGTACTCACAGAGAGAGATATAAACCTAGTTAACTA
AAAGCTTTCTAGACCAT
BS28196.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:33:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10737-RC | 2835 | CG10737-PC | 1..2835 | 17..2851 | 13980 | 99.5 | Plus |
| CG10737-RD | 2835 | CG10737-PD | 1..2835 | 17..2851 | 13980 | 99.5 | Plus |
| CG10737-RO | 2835 | CG10737-PO | 1..2789 | 17..2805 | 13750 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:33:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10737-RC | 3167 | CG10737-RC | 240..3075 | 17..2852 | 13985 | 99.5 | Plus |
| CG10737-RD | 3016 | CG10737-RD | 89..2924 | 17..2852 | 13985 | 99.5 | Plus |
| CG10737-RO | 3430 | CG10737-RO | 240..3028 | 17..2805 | 13750 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:33:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19170673..19171161 | 17..505 | 2370 | 99 | Plus |
| 2R | 25286936 | 2R | 19174880..19175309 | 1950..2379 | 2150 | 100 | Plus |
| 2R | 25286936 | 2R | 19173704..19174121 | 1300..1717 | 2045 | 99.3 | Plus |
| 2R | 25286936 | 2R | 19174575..19174783 | 1743..1951 | 1045 | 100 | Plus |
| 2R | 25286936 | 2R | 19173432..19173643 | 1088..1299 | 1030 | 99.1 | Plus |
| 2R | 25286936 | 2R | 19172344..19172526 | 730..912 | 900 | 99.5 | Plus |
| 2R | 25286936 | 2R | 19172712..19172888 | 911..1087 | 870 | 99.4 | Plus |
| 2R | 25286936 | 2R | 19176187..19176347 | 2378..2538 | 805 | 100 | Plus |
| 2R | 25286936 | 2R | 19176587..19176743 | 2646..2802 | 785 | 100 | Plus |
| 2R | 25286936 | 2R | 19171252..19171375 | 505..628 | 605 | 99.2 | Plus |
| 2R | 25286936 | 2R | 19176415..19176523 | 2538..2646 | 545 | 100 | Plus |
| 2R | 25286936 | 2R | 19172177..19172280 | 627..730 | 520 | 100 | Plus |
| 2R | 25286936 | 2R | 19176941..19176990 | 2803..2852 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:33:44 has no hits.
BS28196.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-30 10:04:10 Download gff for
BS28196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10737-RC | 323..3155 | 17..2849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:47 Download gff for
BS28196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10737-RD | 89..2921 | 17..2849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:06:54 Download gff for
BS28196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10737-RD | 89..2921 | 17..2849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:06:54 Download gff for
BS28196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19171253..19171375 | 506..628 | 99 | -> | Plus |
| 2R | 19172179..19172280 | 629..730 | 100 | -> | Plus |
| 2R | 19172345..19172524 | 731..910 | 99 | -> | Plus |
| 2R | 19172712..19172888 | 911..1087 | 99 | -> | Plus |
| 2R | 19173432..19173643 | 1088..1299 | 99 | -> | Plus |
| 2R | 19170673..19171161 | 17..505 | 98 | -> | Plus |
| 2R | 19173704..19174121 | 1300..1717 | 99 | -> | Plus |
| 2R | 19174339..19174365 | 1718..1744 | 100 | -> | Plus |
| 2R | 19174577..19174783 | 1745..1951 | 100 | -> | Plus |
| 2R | 19174882..19175308 | 1952..2378 | 100 | -> | Plus |
| 2R | 19176188..19176347 | 2379..2538 | 100 | -> | Plus |
| 2R | 19176416..19176523 | 2539..2646 | 100 | -> | Plus |
| 2R | 19176588..19176743 | 2647..2802 | 100 | -> | Plus |
| 2R | 19176941..19176987 | 2803..2849 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:47 Download gff for
BS28196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15060217..15060393 | 911..1087 | 99 | -> | Plus |
| arm_2R | 15060937..15061148 | 1088..1299 | 99 | -> | Plus |
| arm_2R | 15059850..15060029 | 731..910 | 99 | -> | Plus |
| arm_2R | 15058178..15058666 | 17..505 | 98 | -> | Plus |
| arm_2R | 15058758..15058880 | 506..628 | 99 | -> | Plus |
| arm_2R | 15059684..15059785 | 629..730 | 100 | -> | Plus |
| arm_2R | 15061209..15061626 | 1300..1717 | 99 | -> | Plus |
| arm_2R | 15061844..15061870 | 1718..1744 | 100 | -> | Plus |
| arm_2R | 15062082..15062288 | 1745..1951 | 100 | -> | Plus |
| arm_2R | 15062387..15062813 | 1952..2378 | 100 | -> | Plus |
| arm_2R | 15063693..15063852 | 2379..2538 | 100 | -> | Plus |
| arm_2R | 15063921..15064028 | 2539..2646 | 100 | -> | Plus |
| arm_2R | 15064093..15064248 | 2647..2802 | 100 | -> | Plus |
| arm_2R | 15064446..15064492 | 2803..2849 | 100 | | Plus |
BS28196.pep Sequence
Translation from 16 to 2850
> BS28196.pep
MDLADQIDDYICSFEGLGDLTMDSLAIFIFLWAVLALFSVWLIKLLYHKY
LNKDKSASAANSRQTSVAPTSGSPTSVAGKTEKRLSEPRDLLATKSKVEG
LDLSKPLAGASGGRGRSSASPLNTAGAAAGGPRRRVVRQSSTGPENRKKR
YVPPPSNVVGPETSSVTWTSQVFRWLYSDLVIVNELLMSWVIAINDTLRK
SVEEHGVAVEVVRVLPDSPAPGLNNIFCNCDENNPADMLITFDCDAMPVL
QVKTFRQKSGKVETSHYKVTVSRFRARMAIPMNYNSLKGEMRVEGYPDVR
IAMNSVGAIKAMDQDEQQLQTVISDILTTALRDTIYPVDFSIYSTCPRAE
VEPLDLPHNMEQHMGGVGLRDSQHMVSGRRLLVKIVKGDGIRDAQNPYVV
IEMDEPAQKNQTGTQRGGKPFWDEHFLFELSPQSAEILFEVYDHPVIASD
PPKFLGLGLVGIDELAVGPASTQLLQLQPRPYETQPVSGAITVDFVFIEG
AEIPAGARPQRLKEALRLSTPAINEHIRNGADLADAAVRALQDGALSSSG
SGGQPSKSTLIIHSVQRNSSSPNAFKVELNRDGQIEVTDTATELDQAVAQ
AFERAANEAQTELELELAKEEKSSQLGEPLIDSGNGTVNEESTAEFGQPN
AASSPNGSSYHNNYSLNGNGNSNGAGSGGYNSLPRNGGAQQLAQQSGLLE
GHDVVDDRGRSKKRNFFGTLKKRLSRSKTRTLSADQPNNNSHKSLSATNS
NTTTATGFPRTATGTLNGDSSRSLSVDRATLSKSNSLGPRMGIGHSITDH
SRRSSISESSAISGFSSASNKTYVHEASTLVLETIENGIKRHFIVPLAIA
QRPRWRRKGTKLHIYNDHTFIAKHLSGSGLQCSICMKSIPRRPGKQGYEC
RDCQLISHKQCHIRAPQACPNPTVLSMELTSFPVLTERDINLVN*
BS28196.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:26:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10737-PC | 944 | CG10737-PC | 1..944 | 1..944 | 4848 | 100 | Plus |
| CG10737-PD | 944 | CG10737-PD | 1..944 | 1..944 | 4848 | 100 | Plus |
| CG10737-PT | 955 | CG10737-PT | 1..955 | 1..944 | 4826 | 98.8 | Plus |
| CG10737-PO | 944 | CG10737-PO | 1..930 | 1..930 | 4778 | 100 | Plus |
| CG10737-PN | 924 | CG10737-PN | 1..924 | 1..944 | 4725 | 97.9 | Plus |
