BS28211.complete Sequence
1004 bp assembled on 2012-03-06
GenBank Submission: KX800277
> BS28211.complete
GAAGTTATCAGTCGACATGCTCAGACAACTGACACGGTCAATGGGCCCGA
CCTCGCGGCTGCTTAAGCAGGTCAACTATGGCACAAATGCCCCAGCTGGC
ACCCACATTCCCGTGACCAAGGCCCTGGAAATTGGACAGTGGGAGGAAAA
GCTCAAGGCCGCCGGCGTCGAGGACAGGAAGTTCAACGTGAAATGCATCG
TGTCGCATGTCCTGAAGCAGAAGTTTAGTTCGGTTCCTGACTCATTTGAC
CAGCTGCAGCTAAATCCCGGCCAGCTGGCGGATTTCGAGCGCTTCCTGGA
GGCCCGTTGTGCCCGCATGCCGTTGCAGCACATCATTGGCGAGTGGGACT
TCATGGACATTACGCTGAAGACATCGCCGTCGGTCTTCATTCCACGCCCC
GAAACGGAGGAGTTTATGCGCCTGGTGATCGATGATCACAAGAACGCAAA
GCACGTCGATCTTTTGGAGGTGGGCTGCGGCTCGGGCGCCATGTCCTTGT
CCATGCTACACAGTCTGCCGCAGGTGGTGGCCACTGCCATTGAGCGTAGC
AAGGCGGCAACCGTGCTGGCTGCGGAGAATGCCAAAATGCTGGGGCTGCT
GAATCGATTTGAGGTACACAACCACACCATGGAGGAGGACAAGTACCTGC
CGGAGGCGCTGAAGGACAAGAAGTACGATTTGATCATCTCCAATCCTCCG
TATGTGAAAACTGAGGAGTTTCAGTTTCTGCATCCCGAAGTCGTGGTGTA
TGAGAACCTTAATGCCCTGGACGGTGGGTCCGATGGATTGAGGGTGGCTC
GACTGGTCTTCGACTTGGCATGCCGGCACCTGCGTCCCGGTGGCAAGCTC
TGGCTGGAACTGGGCAACGACCACCCGCCGATGGTGAAGACCATTATGAA
TCTGAAGTACGAGGGCCGGCTTAAGTTCATCGCCGGTTACAGTGACCAGT
ATCAGCGCGAGAGATTCGTTCAGATCGAGAAGGTCTAGAAGCTTTCTAGA
CCAT
BS28211.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:31:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9531-RB | 972 | CG9531-PB | 1..972 | 17..988 | 4770 | 99.4 | Plus |
| CG9531-RA | 972 | CG9531-PA | 1..972 | 17..988 | 4770 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:31:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9531-RB | 1221 | CG9531-RB | 91..1062 | 17..988 | 4770 | 99.4 | Plus |
| CG9531-RA | 1369 | CG9531-RA | 91..1062 | 17..988 | 4770 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:31:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6466816..6467339 | 750..227 | 2605 | 99.8 | Minus |
| 2L | 23513712 | 2L | 6466524..6466764 | 988..748 | 1130 | 97.9 | Minus |
| 2L | 23513712 | 2L | 6467399..6467608 | 226..17 | 1050 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:31:04 has no hits.
BS28211.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-06 14:55:26 Download gff for
BS28211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9531-RA | 93..1064 | 17..988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:15 Download gff for
BS28211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9531-RA | 91..1062 | 17..988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:12:52 Download gff for
BS28211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9531-RA | 91..1062 | 17..988 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:12:52 Download gff for
BS28211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6466524..6466764 | 748..988 | 97 | <- | Minus |
| 2L | 6466819..6467339 | 227..747 | 99 | <- | Minus |
| 2L | 6467399..6467608 | 17..226 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:15 Download gff for
BS28211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6467399..6467608 | 17..226 | 100 | | Minus |
| arm_2L | 6466524..6466764 | 748..988 | 97 | <- | Minus |
| arm_2L | 6466819..6467339 | 227..747 | 99 | <- | Minus |
BS28211.pep Sequence
Translation from 16 to 987
> BS28211.pep
MLRQLTRSMGPTSRLLKQVNYGTNAPAGTHIPVTKALEIGQWEEKLKAAG
VEDRKFNVKCIVSHVLKQKFSSVPDSFDQLQLNPGQLADFERFLEARCAR
MPLQHIIGEWDFMDITLKTSPSVFIPRPETEEFMRLVIDDHKNAKHVDLL
EVGCGSGAMSLSMLHSLPQVVATAIERSKAATVLAAENAKMLGLLNRFEV
HNHTMEEDKYLPEALKDKKYDLIISNPPYVKTEEFQFLHPEVVVYENLNA
LDGGSDGLRVARLVFDLACRHLRPGGKLWLELGNDHPPMVKTIMNLKYEG
RLKFIAGYSDQYQRERFVQIEKV*
BS28211.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:50:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9531-PB | 323 | CG9531-PB | 1..323 | 1..323 | 1681 | 100 | Plus |
| CG9531-PA | 323 | CG9531-PA | 1..323 | 1..323 | 1681 | 100 | Plus |
