BS28218.complete Sequence
584 bp assembled on 2012-03-05
GenBank Submission: KX802556
> BS28218.complete
GAAGTTATCAGTCGACATGAATCGGCAGGCGAAATTCCTAATCTTGTGCC
TCTTTGTGGGCCTCTTCTCCGCGAATTTGTGCGAAGAAGCAGTGACCACA
CCGGCTCCAGCGGACACCACCACCCAGGAATCCAAGAACACCACCACTCC
GCCGGACACCACCACTACTGTGACGCCACCGTCGACCTCAACCACGAGCA
CCACAACTGAAAAGACCACGACGACGCCACCAATTACCACATCGACTGAG
AAGACCACAACTTCCACTACTCCAGCCAGCACCACCAGCAGCACCACTCC
GGCCAGCACCACCAGCAGCACCACTCCGGCAACGACCACCACCACGCCTG
GAACTACATCTACGACCACTCCGTCTCCGAACTCGACCACAACTACGCCG
CCGCCACACACATCAACCACTCCGGCGCCGAAGCCCGTGCCGTGCGGTCA
TTTCGATGGATCCTCGTTCATTGGCGGCATTGTGCTGACTCTGGGCCTGC
TCGCTATCGGCTTAGTGGCCTACAAGTTCTACAAGGCCCGCAACGAGCGC
AACTACCACACCCTTTGAAAGCTTTCTAGACCAT
BS28218.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:08:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vsg-RC | 552 | CG16707-PC | 1..552 | 17..568 | 2760 | 100 | Plus |
| vsg-RD | 552 | CG16707-PD | 1..552 | 17..568 | 2760 | 100 | Plus |
| vsg-RE | 789 | CG16707-PE | 1..549 | 17..568 | 2680 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:08:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vsg-RC | 2167 | CG16707-RC | 122..673 | 17..568 | 2760 | 100 | Plus |
| vsg-RD | 2273 | CG16707-RD | 228..779 | 17..568 | 2760 | 100 | Plus |
| vsg-RE | 2164 | CG16707-RE | 122..670 | 17..568 | 2680 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:08:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9715742..9716222 | 88..568 | 2405 | 100 | Plus |
| 3L | 28110227 | 3L | 9714551..9714623 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:08:53 has no hits.
BS28218.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:46 Download gff for
BS28218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vsg-RC | 111..661 | 17..567 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:41 Download gff for
BS28218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vsg-RD | 228..778 | 17..567 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:04:59 Download gff for
BS28218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vsg-RD | 228..778 | 17..567 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:04:59 Download gff for
BS28218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9714551..9714623 | 17..89 | 100 | -> | Plus |
| 3L | 9715744..9716221 | 90..567 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:41 Download gff for
BS28218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9707651..9707723 | 17..89 | 100 | -> | Plus |
| arm_3L | 9708844..9709321 | 90..567 | 100 | | Plus |
BS28218.pep Sequence
Translation from 16 to 567
> BS28218.pep
MNRQAKFLILCLFVGLFSANLCEEAVTTPAPADTTTQESKNTTTPPDTTT
TVTPPSTSTTSTTTEKTTTTPPITTSTEKTTTSTTPASTTSSTTPASTTS
STTPATTTTTPGTTSTTTPSPNSTTTTPPPHTSTTPAPKPVPCGHFDGSS
FIGGIVLTLGLLAIGLVAYKFYKARNERNYHTL*
BS28218.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:49:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vsg-PC | 183 | CG16707-PC | 1..183 | 1..183 | 954 | 100 | Plus |
| vsg-PD | 183 | CG16707-PD | 1..183 | 1..183 | 954 | 100 | Plus |
| vsg-PB | 182 | CG16707-PB | 1..182 | 1..183 | 938 | 99.5 | Plus |
| vsg-PA | 182 | CG16707-PA | 1..182 | 1..183 | 938 | 99.5 | Plus |
| vsg-PE | 262 | CG16707-PE | 1..182 | 1..183 | 938 | 99.5 | Plus |
