BS28240.complete Sequence
1169 bp assembled on 2012-03-06
GenBank Submission: KX805224
> BS28240.complete
GAAGTTATCAGTCGACATGGACGCCAGCTACTTTGCCGTCCAGAGAAGAG
CTCTGGAAATAGTTGGATTCGATCCCAGTACTCCGCAACTGAGTCTGAAA
CATCCCATCTGGGCCGGGATTCTCATCCTGTCCTTGATCTCTCACAACTG
GCCCATGGTAGTCTATGCCCTGCAGGATCTCTCCGACTTGACCCGTCTGA
CGGACAACTTTGCGGTGTTTATGCAAGGATCACAGAGCACCTTCAAGTTC
CTGGTCATGATGGCGAAACGAAGGCGCATTGGATCGTTGATTCACCGTTT
GCATAAGCTAAACCAGGCGGCCAGTGCCACGCCCAATCACCTGGAGAAGA
TCGAGAGGGAAAACCAACTGGATAGGTATGTCGCCAGGTCCTTTAGAAAT
GCCGCCTACGGAGTGATTTGTGCCTCGGCCATAGCGCCCATGTTGCTTGG
CCTGTGGGGATATGTGGAGACGGGTGTATTTACCCCGACCACACCCATGG
AGTTCAACTTCTGGCTGGACGAGCGAAAGCCTCACTTTTATTGGCCCATC
TACGTTTGGGGCGTACTGGGCGTGGCAGCTGCCGCCTGGTTGGCCATTGC
AACGGACACCCTGTTCTCCTGGCTGACTCACAATGTGGTGATTCAGTTCC
AACTACTGGAGCTTGTTCTCGAAGAGAAGGATCTGAATGGCGGAGACTCT
CGCCTGACCGGGTTTGTTAGTCGTCATCGTATAGCTCTGGATTTGGCCAA
GGAACTAAGTTCGATTTTCGGGGAGATCGTCTTTGTGAAATACATGCTCA
GTTACCTGCAACTCTGCATGTTGGCCTTTCGCTTCAGCCGCAGTGGCTGG
AGTGCCCAGGTGCCATTTAGAGCCACCTTCCTAGTGGCCATCATCATCCA
ACTGAGTTCGTATTGCTATGGAGGCGAGTATATAAAGCAGCAAAGTTTGG
CCATCGCACAAGCCGTTTATGGTCAAATCAATTGGCCAGAAATGACGCCA
AAGAAAAGAAGACTCTGGCAAATGGTGATCATGAGGGCGCAGCGACCGGC
TAAGATTTTTGGATTCATGTTCGTTGTGGACTTGCCACTGCTGCTTTGGG
TCATCAGAACTGCGGGCTCATTTCTGGCCATGCTTAGGACTTTCGAGCGT
TAGAAGCTTTCTAGACCAT
BS28240.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:35:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Or45a-RA | 1137 | CG1978-PA | 1..1137 | 17..1153 | 5685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:35:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Or45a-RA | 3461 | CG1978-RA | 72..1210 | 15..1153 | 5695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:35:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9345420..9346506 | 15..1101 | 5435 | 100 | Plus |
| 2R | 25286936 | 2R | 9346558..9346612 | 1099..1153 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:35:29 has no hits.
BS28240.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-06 15:57:06 Download gff for
BS28240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or45a-RA | 1..1137 | 17..1153 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:35 Download gff for
BS28240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or45a-RA | 74..1210 | 17..1153 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:14:24 Download gff for
BS28240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or45a-RA | 74..1210 | 17..1153 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:14:24 Download gff for
BS28240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9345422..9346504 | 17..1099 | 100 | -> | Plus |
| 2R | 9346559..9346612 | 1100..1153 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:35 Download gff for
BS28240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5232927..5234009 | 17..1099 | 100 | -> | Plus |
| arm_2R | 5234064..5234117 | 1100..1153 | 100 | | Plus |
BS28240.pep Sequence
Translation from 16 to 1152
> BS28240.pep
MDASYFAVQRRALEIVGFDPSTPQLSLKHPIWAGILILSLISHNWPMVVY
ALQDLSDLTRLTDNFAVFMQGSQSTFKFLVMMAKRRRIGSLIHRLHKLNQ
AASATPNHLEKIERENQLDRYVARSFRNAAYGVICASAIAPMLLGLWGYV
ETGVFTPTTPMEFNFWLDERKPHFYWPIYVWGVLGVAAAAWLAIATDTLF
SWLTHNVVIQFQLLELVLEEKDLNGGDSRLTGFVSRHRIALDLAKELSSI
FGEIVFVKYMLSYLQLCMLAFRFSRSGWSAQVPFRATFLVAIIIQLSSYC
YGGEYIKQQSLAIAQAVYGQINWPEMTPKKRRLWQMVIMRAQRPAKIFGF
MFVVDLPLLLWVIRTAGSFLAMLRTFER*
BS28240.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:50:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Or45a-PA | 378 | CG1978-PA | 1..378 | 1..378 | 1963 | 100 | Plus |
| Or9a-PA | 392 | CG15302-PA | 19..390 | 8..376 | 313 | 24.4 | Plus |
| Or82a-PA | 385 | CG31519-PA | 29..385 | 25..377 | 293 | 27 | Plus |
| Or47a-PA | 385 | CG13225-PA | 3..384 | 4..376 | 272 | 23.4 | Plus |
| Or1a-PA | 392 | CG17885-PA | 15..382 | 9..373 | 254 | 23.1 | Plus |
