BS28243.complete Sequence
2162 bp assembled on 2012-04-11
GenBank Submission: KX803298
> BS28243.complete
GAAGTTATCAGTCGACATGCGCAGACAGCAGTCCTACCGTTTCGAGGACA
ACGAGTCCACGTCTTACGCTCTGAGGATGAATCGTCGCTTTTCGAGAGTG
GAGTCCGGGGCGGACCTTAAGGATTATTTCGATCGGGGTGATATCGCTTC
CCGGGAGAACCGCTGGAACTTCGAGGTGGCATGGGAGGTGGCCAACAAGG
TGGGCGGTATTTACACGGTGATCCGGTCGAAGGCATATGTCTCCACCGAG
GAGATGGGCGAGCAGTTGTGTATGATGGGTCCCTACAAGGAGCACTGTGC
CCGCACCGAGATGGAGGAGATGGAGTTCCCCAGGGGAAACCCCCTACTAG
ACGCTGTCAACTCATTGCGCTCGCGAGGCTATAAAATCCACACCGGTCGC
TGGCTGGTGGACGGAAATCCTCAATTAATCCTGTTCGATATTGGATCAGC
CGCTTGGAAGCTGGATCAGTTCAAATCGGAGATGTGGGAGAAGTGCCATA
TTGGAATACCTCATTTGGATATCGAGACGAACGATGCCATTATCCTTGGC
TTTATGATTGCCGAGTTCCTGGAGGAGTTCCGCAACTTTGCCGTGACTTA
TTCGCAGAACAACGAATTGAGCGCTCCGAGGATTGTCGCCCACTTCCACG
AATGGCAAGCTGGCGTGGGTCTCATTGTCCTACGTACTCGTCTGGTGGAG
ATCGCCACTGTGTTCACTACCCACGCCACATTGTTGGGTCGTTACTTGTG
CGCCGGCAACACCGATTTCTACAACAATCTGGACAAGTTCGCCGTGGACG
AAGAGGCGGGCAAGCGCCAAATCTATCATCGTTATTGCCTGGAGCGAGGT
GCCACCCACTTGGCTCATGTGTTCACCACCGTCTCCGAGATTACGGGCTA
CGAGGCAGAGCATCTGCTCAAGCGCAAACCGGACATCATCACGCCCAATG
GACTGAACGTGAAGAAGTTCTCGGCCATCCACGAGTTCCAGAACTTGCAC
GCCGTTGCCAAGGAGAAGATCAACGAATTCGTGCGGGGTCACTTTTACGG
CCACATTGACTTTGATTTAGATAAGACCCTGTACTTCTTCATCGCCGGTC
GCTACGAGTTTGGAAACAAGGGAGCCGACATCTTCATCGAGGCACTGGCT
CGCTTGAACGCGATGCTCAAGCACGAGAAGCCGGACACCACGGTGGTGGC
CTTTCTCATCTTCCCCACCAAGACCAACAACTTCAACGTGGACTCGCTGC
GAGGACATGCCGTGATCAAGCAGTTGCGCGATACGATCAACAACGTCCAG
CAGGCCGTGGGCAAGCGGATGTTCGACACTTGTCTGCAGGGCAACATACC
CAATGCCGATGATCTGCTTCAGAAGGATGACCTCGTCAAGATCAAGCGTT
GCATGTTCGCCATGCAGCGCGATTCGATGCCGCCTGTTACCACGCACAAT
GTGGCTGATGACTGGAATGATCCGGTGCTATCCTCAATCCGTCGTTGCCA
TCTGTTCAACTCGCGCCACGATCGTGTCAAGATGGTCTTCCATCCGGAGT
TCCTCACATCCACAAATCCTCTGTTTGGAATCGACTACGAAGAATTTGTC
CGTGGCTGCCACTTGGGTGTCTTCCCCTCATACTACGAGCCCTGGGGTTA
CACTCCCGCCGAGTGTACGGTGATGGGTATCCCCAGCGTAACCACCAATC
TGTCCGGCTTTGGCTGCTTCATGGAGGAGCACATCAGTGATCCCAAGTCA
TACGGTATCTACATCGTGGATCGCCGCTATATCGGCTTGGAGAACAGCGT
TCAGCAGCTGTCCAGCTTTATGATGGAGTTCTCCAGGCTGAACCGCCGCC
AGCGCATTATCCAGCGTAATCGCACGGAGCGGTTGAGCGATCTTCTGGAC
TGGCGCACCCTGGGCATTTACTACAGACAGGCCAGGGTTAAGGCCCTGCA
AGCTGTTTACCCAGACTATGTGGATGAATTGTCTCTCTATGGATCGAAGA
ACAACTTGATCTTCTCGCGACCGCACAGCGAACCTCCCAGTCCTACTTCA
TCGCGGCACACCACTCCAGCTCCATCGGTTCACGGTTCGGATGACGAGGA
CTCCGTGGATGAGGAGACCGAACTCAAGGAATTGGGGATTAAGTAGAAGC
TTTCTAGACCAT
BS28243.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:37:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GlyS-RA | 2130 | CG6904-PA | 1..2130 | 17..2146 | 10650 | 100 | Plus |
| GlyS-RD | 2070 | CG6904-PD | 1..2070 | 77..2146 | 10350 | 100 | Plus |
| GlyS-RB | 2070 | CG6904-PB | 1..2070 | 77..2146 | 10350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:37:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GlyS-RA | 2584 | CG6904-RA | 95..2225 | 17..2147 | 10655 | 100 | Plus |
| GlyS-RD | 2473 | CG6904-RD | 43..2114 | 76..2147 | 10360 | 100 | Plus |
| GlyS-RC | 2487 | CG6904-RC | 57..2128 | 76..2147 | 10360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:37:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15144266..15145240 | 1050..76 | 4875 | 100 | Minus |
| 3R | 32079331 | 3R | 15142959..15143831 | 1918..1046 | 4350 | 99.9 | Minus |
| 3R | 32079331 | 3R | 15142728..15142864 | 2055..1919 | 685 | 100 | Minus |
| 3R | 32079331 | 3R | 15142202..15142294 | 2147..2055 | 465 | 100 | Minus |
| 3R | 32079331 | 3R | 15145318..15145377 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:37:29 has no hits.
BS28243.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 12:37:30 Download gff for
BS28243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6904-RA | 196..2325 | 17..2146 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:19 Download gff for
BS28243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlyS-RA | 95..2224 | 17..2146 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:33:11 Download gff for
BS28243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlyS-RA | 95..2224 | 17..2146 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:33:11 Download gff for
BS28243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15142729..15142864 | 1919..2054 | 100 | <- | Minus |
| 3R | 15142203..15142294 | 2055..2146 | 100 | <- | Minus |
| 3R | 15142959..15143826 | 1051..1918 | 100 | <- | Minus |
| 3R | 15144266..15145239 | 77..1050 | 100 | <- | Minus |
| 3R | 15145318..15145377 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:19 Download gff for
BS28243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10967925..10968016 | 2055..2146 | 100 | <- | Minus |
| arm_3R | 10968451..10968586 | 1919..2054 | 100 | <- | Minus |
| arm_3R | 10968681..10969548 | 1051..1918 | 100 | <- | Minus |
| arm_3R | 10969988..10970961 | 77..1050 | 100 | <- | Minus |
| arm_3R | 10971040..10971099 | 17..76 | 100 | | Minus |
BS28243.pep Sequence
Translation from 16 to 2145
> BS28243.pep
MRRQQSYRFEDNESTSYALRMNRRFSRVESGADLKDYFDRGDIASRENRW
NFEVAWEVANKVGGIYTVIRSKAYVSTEEMGEQLCMMGPYKEHCARTEME
EMEFPRGNPLLDAVNSLRSRGYKIHTGRWLVDGNPQLILFDIGSAAWKLD
QFKSEMWEKCHIGIPHLDIETNDAIILGFMIAEFLEEFRNFAVTYSQNNE
LSAPRIVAHFHEWQAGVGLIVLRTRLVEIATVFTTHATLLGRYLCAGNTD
FYNNLDKFAVDEEAGKRQIYHRYCLERGATHLAHVFTTVSEITGYEAEHL
LKRKPDIITPNGLNVKKFSAIHEFQNLHAVAKEKINEFVRGHFYGHIDFD
LDKTLYFFIAGRYEFGNKGADIFIEALARLNAMLKHEKPDTTVVAFLIFP
TKTNNFNVDSLRGHAVIKQLRDTINNVQQAVGKRMFDTCLQGNIPNADDL
LQKDDLVKIKRCMFAMQRDSMPPVTTHNVADDWNDPVLSSIRRCHLFNSR
HDRVKMVFHPEFLTSTNPLFGIDYEEFVRGCHLGVFPSYYEPWGYTPAEC
TVMGIPSVTTNLSGFGCFMEEHISDPKSYGIYIVDRRYIGLENSVQQLSS
FMMEFSRLNRRQRIIQRNRTERLSDLLDWRTLGIYYRQARVKALQAVYPD
YVDELSLYGSKNNLIFSRPHSEPPSPTSSRHTTPAPSVHGSDDEDSVDEE
TELKELGIK*
BS28243.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:18:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GlyS-PA | 709 | CG6904-PA | 1..709 | 1..709 | 3769 | 100 | Plus |
| GlyS-PD | 689 | CG6904-PD | 1..689 | 21..709 | 3667 | 100 | Plus |
| GlyS-PB | 689 | CG6904-PB | 1..689 | 21..709 | 3667 | 100 | Plus |
| GlyS-PC | 689 | CG6904-PC | 1..689 | 21..709 | 3667 | 100 | Plus |
