BS28271.complete Sequence
1058 bp assembled on 2012-05-15
GenBank Submission: KX800418
> BS28271.complete
GAAGTTATCAGTCGACATGCAGCCAGGATTTACGGAGCGAATGCGAGACC
ATCTAATGCTCATTGAAATTTACGATTATGCTGCGAAATTATTAAACAAT
ATGACCGCCAGAGGAGTCAGGAATTCAGTGGGAAAATCAGCCGAGAGCCG
TACTAAGGAATCAACAGGGAAATTGGGCAGCCTGCTTGGCCGCACACTGG
CCAAAGTGGCCAAAGTGGCCCGCTCCAATCCCGCCCAGCACGTGACCAAT
CTGCCCGTTTCCGCACTCCTGCTCCAGGCCCTCGACGTGGCGGACGTGGC
CCGCGGACAGGGAATCGATTATCCCATCACTAGCACCACCGGGACCACCT
TCAACATTATCACCACCACCACCACCACCACCACCACCACCACGGGCAGT
GACCCAACGGATGTGCTCGGCAGTCAGCCGCCGGCGTTCTCATTTCCCGC
CAACGTCACTGGAGCACCGGGAAGTGCGGGGAATGCGAACGCATACCTGC
CCGCGGGCAATCTCAGCGGTTTCATCGAATCCTCAACAACGGCGGTGATG
AGCACACTGCCCATACCCACCAGCACCATGGCCACGCTCCAGGCCCAAAC
GGTGGCCACTTTCATCGCCGCCACCGGCAGCAAGAATCGCCCAACGACCA
TCGTTGTCTACCCAACGGTTTCACCCGAATCGATTGTCATCCCGATCGTC
TCCTGTATCTTCGGCTTCCCCATCCTGGCGCTTCTGGTGATCTGTTGCCT
TCGAAGGAGGGCCAAGTTGGCCAGGGAGAGGGATAGGAGGCGTAACTACG
ATATGCAGGACCATGCCGTCAGCCTGGTCAGATTTAGTCCAATACATAGG
CTTAATTACCGATCGTCGCGAGCTATCAGTCTACGTCCTGAACGAAGCCT
AAGCCAGGGCTTCACCTCTCTGGAGCTGGACACTGTGCTGGAGGAGCGCT
GCAGCGACGTGGAGCAAACGCAGACGGAGATGTTCAACGCGGAGTCACCG
ATGGACACCACCTCCTACAAGATGTCCTTCTCTTCGAGCTAAAAGCTTTC
TAGACCAT
BS28271.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:21:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43740-RC | 1491 | CG43740-PC | 1..987 | 56..1042 | 4935 | 100 | Plus |
| CG43740-RA | 987 | CG43740-PA | 1..987 | 56..1042 | 4935 | 100 | Plus |
| CG43740-RB | 819 | CG43740-PB | 1..771 | 56..826 | 3855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:21:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43740-RC | 1878 | CG43740-RC | 101..1120 | 23..1042 | 5100 | 100 | Plus |
| CG43740-RA | 1878 | CG43740-RA | 101..1120 | 23..1042 | 5100 | 100 | Plus |
| CG43740-RB | 1850 | CG43740-RB | 101..904 | 23..826 | 4020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:21:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10335799..10336451 | 16..668 | 3265 | 100 | Plus |
| X | 23542271 | X | 10346849..10347036 | 855..1042 | 940 | 100 | Plus |
| X | 23542271 | X | 10343870..10344056 | 668..854 | 935 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:21:15 has no hits.
BS28271.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 14:08:17 Download gff for
BS28271.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15307-RA | 1..940 | 101..1040 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:37 Download gff for
BS28271.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43740-RA | 94..1118 | 17..1040 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:41:09 Download gff for
BS28271.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43740-RA | 94..1118 | 17..1040 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:41:09 Download gff for
BS28271.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10335800..10336451 | 17..668 | 100 | -> | Plus |
| X | 10343871..10344056 | 669..854 | 100 | -> | Plus |
| X | 10346849..10347034 | 855..1040 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:37 Download gff for
BS28271.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10229833..10230484 | 17..668 | 100 | -> | Plus |
| arm_X | 10237904..10238089 | 669..854 | 100 | -> | Plus |
| arm_X | 10240882..10241067 | 855..1040 | 100 | | Plus |
BS28271.pep Sequence
Translation from 16 to 1041
> BS28271.pep
MQPGFTERMRDHLMLIEIYDYAAKLLNNMTARGVRNSVGKSAESRTKEST
GKLGSLLGRTLAKVAKVARSNPAQHVTNLPVSALLLQALDVADVARGQGI
DYPITSTTGTTFNIITTTTTTTTTTTGSDPTDVLGSQPPAFSFPANVTGA
PGSAGNANAYLPAGNLSGFIESSTTAVMSTLPIPTSTMATLQAQTVATFI
AATGSKNRPTTIVVYPTVSPESIVIPIVSCIFGFPILALLVICCLRRRAK
LARERDRRRNYDMQDHAVSLVRFSPIHRLNYRSSRAISLRPERSLSQGFT
SLELDTVLEERCSDVEQTQTEMFNAESPMDTTSYKMSFSSS*
BS28271.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:35:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43740-PA | 328 | CG43740-PA | 1..328 | 14..341 | 1638 | 100 | Plus |
| CG43740-PC | 496 | CG43740-PC | 1..328 | 14..341 | 1638 | 100 | Plus |
| CG43740-PB | 272 | CG43740-PB | 1..258 | 14..271 | 1286 | 99.6 | Plus |
