BS28287.complete Sequence
821 bp assembled on 2012-05-15
GenBank Submission: KX804498
> BS28287.complete
GAAGTTATCAGTCGACATGCGGCAAGGATCTGTTGTTATCTACCTAGGTT
TGTTGGCTTTCATTGCAATTGTCGATTGCCAGGAAAACAATAATCTCGTG
TCCATAGTAACCGACCACTCTATACAATGCCCACCATTTGACGATCCCAA
CCATAATGTGATGTTGCCATATCCCAATGACTGTAGCAAGTATTACGTAT
GCCAAAAAGGACGAGCCTATGAGCAACAGTGTCCTCTGAATTTGTTCTGG
AGCCAGATGACCTACCGCTGTGACTACAAGGAGTACTCCAACTGCAATAC
GTATATTCCAAGTCCCAACCATGATGTTGAGGTCATATTTAGTGCATATC
CCGGAGATTGCAGGCGATTCTACGAGACACGTATCCTTCGCTGTGAGCAA
AACCTCCAGTGGAGTTCAGTATACCAGAGATGCGTTGTCCCACAGTATGG
CGATTGTCAGAACTCTCCTGTGACCGTGCCACCCGTAGTCCCCTTTACCC
CACTGCCTACCTATCCACCCGTTCCAACCGTTCCCGCAACCGTGATACCT
TATGATCCCATGCCCACCGCTGGTACTCCACCGCCTATAACTCCCATGGA
ATCTTTACCTCTGCCAATTGACGTCCAATCATTGTGCAATAACAGTCCTC
CCAATGCGTACATTCCTTATCCGGGCAGTTGTAAGAAGTTTATACATTGC
GGACCAACAGCAACCATTCTTTCATGCGCAGGCTCCTCGAATTGGAATCC
TGCCCAGCATGCCTGCACCACTTACAGCAATGGGTGCCAGGCTTCTTTAA
ATTGAAAGCTTTCTAGACCAT
BS28287.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:21:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11570-RB | 645 | CG11570-PB | 1..645 | 161..805 | 3225 | 100 | Plus |
| CG11570-RA | 645 | CG11570-PA | 1..645 | 161..805 | 3225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:21:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11570-RB | 936 | CG11570-RB | 42..832 | 17..807 | 3955 | 100 | Plus |
| CG11570-RA | 909 | CG11570-RA | 16..805 | 18..807 | 3950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:21:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11956812..11957519 | 807..100 | 3540 | 100 | Minus |
| 3L | 28110227 | 3L | 11957580..11957662 | 100..18 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:21:19 has no hits.
BS28287.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 14:08:18 Download gff for
BS28287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11570-RA | 1..677 | 128..804 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:39 Download gff for
BS28287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11570-RB | 42..829 | 17..804 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:41:12 Download gff for
BS28287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11570-RB | 42..829 | 17..804 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:41:12 Download gff for
BS28287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11956815..11957518 | 101..804 | 100 | <- | Minus |
| 3L | 11957580..11957662 | 17..100 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:39 Download gff for
BS28287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11949915..11950618 | 101..804 | 100 | <- | Minus |
| arm_3L | 11950680..11950762 | 17..100 | 98 | | Minus |
BS28287.pep Sequence
Translation from 16 to 804
> BS28287.pep
MRQGSVVIYLGLLAFIAIVDCQENNNLVSIVTDHSIQCPPFDDPNHNVML
PYPNDCSKYYVCQKGRAYEQQCPLNLFWSQMTYRCDYKEYSNCNTYIPSP
NHDVEVIFSAYPGDCRRFYETRILRCEQNLQWSSVYQRCVVPQYGDCQNS
PVTVPPVVPFTPLPTYPPVPTVPATVIPYDPMPTAGTPPPITPMESLPLP
IDVQSLCNNSPPNAYIPYPGSCKKFIHCGPTATILSCAGSSNWNPAQHAC
TTYSNGCQASLN*
BS28287.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:35:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11570-PB | 214 | CG11570-PB | 1..214 | 49..262 | 1228 | 100 | Plus |
| CG11570-PA | 214 | CG11570-PA | 1..214 | 49..262 | 1228 | 100 | Plus |
| CG33985-PA | 277 | CG33985-PA | 149..268 | 38..149 | 149 | 27.5 | Plus |
