BS28304.complete Sequence
1238 bp assembled on 2012-03-08
GenBank Submission: KX800816
> BS28304.complete
GAAGTTATCAGTCGACATGGCCAAGGGCATTGCTTCCACTCGTTTGCAAC
GGGAGGATAGCTTCCGGCTGAGGGCATACGGCTCCATACGCAGCTTTATC
GACGGCGGCGAGCGGAAGTTGTCCAACTCCTTCTTCTTCAACCGCCAGCA
AAGTCAACGGCCATCGGAGTGCCCGGAATACGACAGCGTCAGCATGTCGA
AGCTGAGGCGGGAGAGCAGCTTCCTGCGGCGCGGCTCCGTCAGCTCCTCC
TGGTCGATTAGCGATAGTTCCGGCTCCGGATCGAACAACTCCGGCAACTC
ACAAACGCAGTCGCAGTACCAGCAGCACCAGCAACAGCTACAGCAGCACT
GTCGCGATCCCCTGCTCGGCTGGCTGGAGATTGCCATTAGCTATCGTGAG
GCCTTCCACAGCCTCGACTGCACCATGGTGCGTGCGCGGGATCTGCCCGC
CATGGATGCGGCCGGATTGGCGGACCCGTACTGCAAGCTCAACATCATTA
CGCCGGAGGCGCACACCAAGTACACGCGATGGCAGCGCACAAAGACGGTG
CACAAGACCCGCAATCCGGAGTTCAACGAAACGCTGCAGTTCGTCGGCGT
GGAGCCCGAGGAGCTGGGTAACTCGCTGATTTACGTGGCCCTTTTCGACG
ACGACAAGTACGGCCACGACTTTCTCGGCGCGGCCAAGGTCTGCCTTTCC
ACGGTGCACAGCACGTCGCAGTACCGGATTTCGGTGCCACTCGGCGTGGA
GGACCAGTACAGCAACGCGGCGGAGATGGCCCAGAACTGGCCCAATGGCA
AGATGCTTCTCTCGCTCTGCTACAACACCAAGCGAAGGGCGTTGGTGGTG
AATGTGAAACAGTGCATCAACCTGATGGCCATGGACAACAACGGCAGCTC
CGATCCCTTCGTCAAGATCCAACTCAAGCCGGATGCGCACAAGAACAAGA
AGCACAAGACCAGCGTCAAATGGCGCACGCTCAATCCCATCTACAACGAG
GAGTTCTACTTCGAGGCAAGTCCGCACGACCTCAACAAGGAGATGCTCAT
CCTGACCGTGTGGGACAAGGATCTCGGCAAGAGCAACGACTTCCTGGGCA
GCCTGCAATTGGGCGCCCAAAGCAAAGGCGAACGCCTGCAGCAGTGGCTC
GACTGCATCCGATTGCCCGATCACTTCCACGAGAAATGGCATTGCCTCGC
CCCCGACAATCCCGCCCACTGAAAGCTTTCTAGACCAT
BS28304.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:38:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rph-RA | 1917 | CG11556-PA | 711..1917 | 16..1222 | 6035 | 100 | Plus |
| Rph-RD | 1206 | CG11556-PD | 1..1206 | 17..1222 | 6030 | 100 | Plus |
| Rph-RB | 1206 | CG11556-PB | 1..1206 | 17..1222 | 6030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:38:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rph-RD | 3173 | CG11556-RD | 1253..2459 | 16..1222 | 6035 | 100 | Plus |
| Rph-RB | 3341 | CG11556-RB | 1421..2627 | 16..1222 | 6035 | 100 | Plus |
| Rph-RA | 2826 | CG11556-RA | 906..2112 | 16..1222 | 6035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:38:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10750923..10751613 | 706..16 | 3455 | 100 | Minus |
| X | 23542271 | X | 10749791..10750094 | 1222..919 | 1520 | 100 | Minus |
| X | 23542271 | X | 10750156..10750371 | 918..703 | 1080 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 05:38:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1058..1089 | 317..348 | 115 | 84.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2338 | 316..348 | 111 | 81.8 | Plus |
BS28304.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:19 Download gff for
BS28304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rph-RB | 1422..2626 | 17..1221 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:48 Download gff for
BS28304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rph-RA | 907..2111 | 17..1221 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:15:31 Download gff for
BS28304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rph-RA | 907..2111 | 17..1221 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:15:31 Download gff for
BS28304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10749792..10750094 | 919..1221 | 100 | <- | Minus |
| X | 10750156..10750370 | 704..918 | 100 | <- | Minus |
| X | 10750926..10751612 | 17..703 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:48 Download gff for
BS28304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10643825..10644127 | 919..1221 | 100 | <- | Minus |
| arm_X | 10644189..10644403 | 704..918 | 100 | <- | Minus |
| arm_X | 10644959..10645645 | 17..703 | 100 | | Minus |
BS28304.pep Sequence
Translation from 16 to 1221
> BS28304.pep
MAKGIASTRLQREDSFRLRAYGSIRSFIDGGERKLSNSFFFNRQQSQRPS
ECPEYDSVSMSKLRRESSFLRRGSVSSSWSISDSSGSGSNNSGNSQTQSQ
YQQHQQQLQQHCRDPLLGWLEIAISYREAFHSLDCTMVRARDLPAMDAAG
LADPYCKLNIITPEAHTKYTRWQRTKTVHKTRNPEFNETLQFVGVEPEEL
GNSLIYVALFDDDKYGHDFLGAAKVCLSTVHSTSQYRISVPLGVEDQYSN
AAEMAQNWPNGKMLLSLCYNTKRRALVVNVKQCINLMAMDNNGSSDPFVK
IQLKPDAHKNKKHKTSVKWRTLNPIYNEEFYFEASPHDLNKEMLILTVWD
KDLGKSNDFLGSLQLGAQSKGERLQQWLDCIRLPDHFHEKWHCLAPDNPA
H*
BS28304.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:50:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rph-PD | 401 | CG11556-PD | 1..401 | 1..401 | 2139 | 100 | Plus |
| Rph-PB | 401 | CG11556-PB | 1..401 | 1..401 | 2139 | 100 | Plus |
| Rph-PA | 638 | CG11556-PA | 238..638 | 1..401 | 2139 | 100 | Plus |
| Rph-PC | 520 | CG11556-PC | 94..358 | 1..265 | 1204 | 88.7 | Plus |
| Syt1-PE | 472 | CG3139-PE | 193..458 | 117..394 | 354 | 33.3 | Plus |
