BS28306.complete Sequence
1598 bp assembled on 2012-03-14
GenBank Submission: KX806008
> BS28306.complete
GAAGTTATCAGTCGACATGGAGTCTTCCTGCAAATCCTGGCTGTTGTGCA
GCATCCTGGTGCTTGTGGCCTTTTCGTTGGTCAGTGCATCCGAAGATGAA
GAGCGCTTGGTGCGTGACCTCTTTCGAGGCTACAATAAACTCATACGACC
CGTACAGAATATGACACAAAAAGTTGGAGTAAGATTTGGTTTGGCGTTCG
TACAGCTAATCAATGTCAATGAGAAAAATCAAATTATGAAATCAAACGTT
TGGTTACGTTTGGTTTGGTACGACTACCAGCTGCAGTGGGATGAGGCCGA
CTACGGCGGCATCGGGGTGTTGCGTCTGCCCCCCGACAAGGTTTGGAAGC
CGGACATTGTGCTCTTCAATAATGCCGATGGCAACTACGAGGTGCGCTAC
AAGTCCAACGTGCTGATTTATCCCACGGGAGAGGTCCTGTGGGTTCCTCC
GGCCATTTACCAGAGCTCCTGCACCATCGATGTGACCTACTTCCCCTTCG
ATCAGCAGACCTGTATCATGAAGTTCGGATCGTGGACCTTCAATGGAGAT
CAGGTCTCATTGGCGCTCTATAATAATAAGAACTTTGTGGATCTGTCGGA
TTACTGGAAGTCCGGCACCTGGGACATTATAGAGGTGCCCGCCTATCTGA
ACGTTTACGAGGGCGATAGCAACCACCCCACGGAGACTGACATCACATTC
TACATCATCATCCGGCGAAAGACTCTCTTCTACACTGTGAATTTAATTCT
GCCCACGGTGCTGATTTCCTTCCTCTGCGTCTTGGTATTTTACCTGCCAG
CCGAGGCCGGCGAAAAGGTTACGCTCGGAATTAGCATTTTGCTGTCACTG
GTTGTGTTCCTGTTGCTGGTGTCGAAGATTCTGCCACCAACGTCGCTGGT
GCTGCCACTGATCGCCAAATATTTGCTGTTCACCTTCATCATGAACACGG
TTTCCATCCTGGTGACCGTGATCATCATCAACTGGAACTTCCGGGGGCCG
CGCACCCACCGCATGCCCATGTACATCCGCTCCATCTTCCTGCACTACCT
GCCCGCCTTCCTATTCATGAAGCGCCCTCGGAAGACCCGCCTGCGCTGGA
TGATGGAGATGCCCGGAATGAGCATGCCCGCCCATCCTCATCCCTCCTAC
GGCTCGCCAGCGGAGCTGCCCAAGCATATCAGCGCCATCGGCGGCAAGCA
ATCCAAGATGGAGGTCATGGAGTTGTCCGACCTGCATCACCCCAACTGCA
AGATCAACCGCAAGGTCAACAGTGGTGGGGAACTTGGCCTGGGTGACGGT
TGTCGCCGGGAGAGCGAGTCCTCCGATTCCATCCTGCTCTCTCCGGAGGC
CAGCAAGGCCACCGAGGCGGTGGAGTTCATTGCCGAGCACTTGCGGAACG
AGGATCTGTACATTCAGACCCGCGAAGATTGGAAGTACGTGGCCATGGTG
ATCGATCGCTTGCAACTATACATCTTCTTCATTGTGACCACGGCCGGAAC
GGTGGGCATTCTGATGGATGCTCCGCATATTTTCGAGTACGTTGATCAGG
ATCGCATCATCGAGATTTACAGGGGAAAGTAAAAGCTTTCTAGACCAT
BS28306.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:16:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nAChRbeta1-RA | 1566 | CG11348-PA | 1..1566 | 17..1582 | 7830 | 100 | Plus |
| nAChRbeta1-RB | 195 | CG11348-PB | 1..64 | 17..80 | 320 | 100 | Plus |
| nAChRalpha2-RB | 1731 | CG6844-PB | 514..588 | 479..553 | 225 | 86.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:16:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nAChRbeta1-RA | 2460 | CG11348-RA | 240..1806 | 16..1582 | 7835 | 100 | Plus |
| nAChRbeta1-RB | 818 | CG11348-RB | 240..304 | 16..80 | 325 | 100 | Plus |
| nAChRalpha2-RB | 2319 | CG6844-RB | 967..1041 | 479..553 | 225 | 86.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:15:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4434488..4435089 | 816..1417 | 3010 | 100 | Plus |
| 3L | 28110227 | 3L | 4433615..4434061 | 373..819 | 2235 | 100 | Plus |
| 3L | 28110227 | 3L | 4435172..4435339 | 1415..1582 | 840 | 100 | Plus |
| 3L | 28110227 | 3L | 4433305..4433459 | 218..372 | 775 | 100 | Plus |
| 3L | 28110227 | 3L | 4432385..4432522 | 80..217 | 690 | 100 | Plus |
| 3L | 28110227 | 3L | 4429651..4429715 | 16..80 | 325 | 100 | Plus |
| 3R | 32079331 | 3R | 24487529..24487605 | 479..555 | 235 | 87 | Plus |
| X | 23542271 | X | 8306670..8306749 | 528..449 | 190 | 82.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:16:00 has no hits.
BS28306.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-14 14:26:18 Download gff for
BS28306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nAcRbeta-64B-RA | 220..1783 | 17..1580 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:19 Download gff for
BS28306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nAcRbeta-64B-RA | 241..1804 | 17..1580 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:07:18 Download gff for
BS28306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nAChRbeta1-RA | 241..1804 | 17..1580 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:07:18 Download gff for
BS28306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4429652..4429715 | 17..80 | 100 | -> | Plus |
| 3L | 4432386..4432522 | 81..217 | 100 | -> | Plus |
| 3L | 4433305..4433459 | 218..372 | 100 | -> | Plus |
| 3L | 4433615..4434059 | 373..817 | 100 | -> | Plus |
| 3L | 4434490..4435089 | 818..1417 | 100 | -> | Plus |
| 3L | 4435175..4435337 | 1418..1580 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:19 Download gff for
BS28306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4429652..4429715 | 17..80 | 100 | -> | Plus |
| arm_3L | 4432386..4432522 | 81..217 | 100 | -> | Plus |
| arm_3L | 4433305..4433459 | 218..372 | 100 | -> | Plus |
| arm_3L | 4433615..4434059 | 373..817 | 100 | -> | Plus |
| arm_3L | 4434490..4435089 | 818..1417 | 100 | -> | Plus |
| arm_3L | 4435175..4435337 | 1418..1580 | 100 | | Plus |
BS28306.pep Sequence
Translation from 16 to 1581
> BS28306.pep
MESSCKSWLLCSILVLVAFSLVSASEDEERLVRDLFRGYNKLIRPVQNMT
QKVGVRFGLAFVQLINVNEKNQIMKSNVWLRLVWYDYQLQWDEADYGGIG
VLRLPPDKVWKPDIVLFNNADGNYEVRYKSNVLIYPTGEVLWVPPAIYQS
SCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVDLSDYWKSG
TWDIIEVPAYLNVYEGDSNHPTETDITFYIIIRRKTLFYTVNLILPTVLI
SFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIA
KYLLFTFIMNTVSILVTVIIINWNFRGPRTHRMPMYIRSIFLHYLPAFLF
MKRPRKTRLRWMMEMPGMSMPAHPHPSYGSPAELPKHISAIGGKQSKMEV
MELSDLHHPNCKINRKVNSGGELGLGDGCRRESESSDSILLSPEASKATE
AVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVTTAGTVGILM
DAPHIFEYVDQDRIIEIYRGK*
BS28306.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:53:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nAChRbeta1-PA | 521 | CG11348-PA | 1..521 | 1..521 | 2739 | 100 | Plus |
| nAChRalpha1-PC | 567 | CG5610-PC | 3..550 | 7..521 | 1070 | 42.8 | Plus |
| nAChRalpha1-PA | 567 | CG5610-PA | 3..550 | 7..521 | 1070 | 42.8 | Plus |
| nAChRalpha4-PC | 539 | CG12414-PC | 6..521 | 22..516 | 1066 | 43.9 | Plus |
| nAChRalpha4-PG | 499 | CG12414-PG | 6..481 | 22..516 | 1064 | 44.6 | Plus |
