BS28307.complete Sequence
2342 bp assembled on 2012-04-11
GenBank Submission: KX803727
> BS28307.complete
GAAGTTATCAGTCGACATGGGAACACGATTGTATTACCGCCGATCCGGCG
GTCAGTTAACAGATCCGATAATTGAGAAGCTAGCCGCTCGTTTTGAGCGT
TCACTGGTGATTACGGATGAGCCGCTAAACAACACATACATCGAGAGTCC
GCCGGAGTCTTCCGATCGCGAGGTTTCACCCAAACTCGTCGTGGGCACCA
AGAAATACGGTCGCCGGTCTAGGCCACAGCAGGGAATCTACGAGTTATCC
GTCACGGACTCGGACAATACGGACGAGGACCAGTTGCAGCAGCAGCAAAA
TCAGCGAAGCCTCAACGGATGCGATGAGCTGGGAGTTCAGGTGCAACGTT
CCTCGTCCCAGAGCGATCTTCCTGGCAGCCGGCGTCTGCGGTCCGTCCAC
ACCAGCGGGAGCAAACTGAAGCGTTGTGCTTCACTGCCAGCACGCCGGAA
GATGAACAGCAACACCACGGGAGCCACTACATCACCGACGGCAGCGGCCA
AGTTGAAACAGCTTTCCATCCAGAGCCAGGCGCAGCACAGCAGCAGCGTG
GAATCACTGGACACCGTGACGCCGCAGCAATTGGAGACGATCTCAGTGCA
TAGCATTATGGAAGCCTGGGAGCTGGCCAGCATTCCCAACACTCGCAACC
TACTTCACGTCCTGGGATTCGATGAGGAGGAGGAGGTGAACCTGCAGCAG
CTAACTAAGGCATTGGAGGAGGAGCTGCGGGGCATCGATGGGGATCACGA
GCAATCGAATATGTTGCGCGCTCTGGCTGCTCTGCAGGCCACCGAGTTGG
GCAACTACAGACTTGCCTATAGGCAGCAGCATGAGGAGAACCTCAAGCTG
AGGGCCGATAATAAGGCGGCCAACCAAAGGGTGGCTTTGCTTGCCGTGGA
AGTGGATGAGCGGCATGCGTCGCTGGAGGATAACTCCAAGAAGCAGGTGC
AGCAGCTGGAGCAAAGACACGCCAGCATGGTGCGTGAAATAACGCTGCGG
ATGACTAATGACCGCGATCACTGGACCAGCATGACGGGAAAGCTGGAGGC
ACAGCTTAAATCGCTTGAGCAGGAGGAGATCCGTCTGAGAACGGAACTTG
AACTGGTGCGCACTGAGAACACGGAGCTTGAGTCGGAGCAGCAAAAGGCT
CACATCCAAATCACAGAGCTTCTCGAACAGAACATTAAGCTCAACCAGGA
ACTGGCCCAAACGTCGAGCAGCATTGGTGGCACCCCGGAGCACAGTCCAT
TGCGACCGAGAAGGCATAGCGAGGACAAGGAGGAGGAGATGCTCCAGCTA
ATGGAGAAGCTGGCTGCTCTTCAAATGGAGAACGCCCAGCTGCGTGACAA
GACTGACGAACTGACCATCGAAATCGAGAGCTTAAATGTGGAACTAATTC
GCTCGAAAACCAAGGCTAAAAAGCAAGAAAAACAGGAGAAACAAGAGGAC
CAGGAGTCGGCGGCCACGGCTACCAAAAGGCGTGGGGATTCGCCGAGCAA
AACACATCTAACAGAGGAGAGCCCTCGCTTGGGGAAACAGCGCAAGTGCA
CCGAAGGAGAGCAGAGCGATGCCAGCAACAGCGGAGATTGGTTGGCTCTA
AACTCCGAGCTGCAAAGAAGTCAAAGCCAGGATGAGGAGCTAACAAGCCT
TAGACAGCGGGTTGCTGAGCTAGAGGAGGAACTCAAGGCTGCAAAGGAAG
GCAGATCTCTCACCCCGGAAAGCCGTTCGAAGGAACTGGAGACCAGTCTA
GAGCAAATGCAGCGTGCCTATGAGGATTGCGAGGACTACTGGCAAACGAA
ACTTAGCGAGGAGCGGCAGCTGTTTGAGAAGGAGCGACAGATCTACGAAG
ATGAGCAGCACGAGAGCGACAAGAAGTTCACCGAGCTGATGGAAAAGGTG
CGCGAGTACGAGGAGCAGTTCAGCAAGGATGGCCGCCTCTCGCCCATTGA
TGAGCGCGATATGCTGGAACAGCAGTACTCGGAATTGGAGGCAGAGGCAG
CCCAGCTGCGCTCGAGTTCCATTCAAATGCTCGAGGAGAAGGCTCAGGAA
ATCAGTTCACTGCAATCAGAGATCGAGGATTTGCGACAGAGATTGGGTGA
GAGCGTTGAGATCCTCACAGGCGCCTGTGAACTCACCTCGGAGTCGGTAG
CCCAACTGAGTGCCGAGGCGGGAAAAAGTCCAGCCAGCTCACCCATCAGC
TACCTCTGGCTGCAGAGCACCATCCAAGAGCCAGCGAAATCGCTTGCCGA
TTCCAAGGATGAAGCCACCGCCAGTGCCATCGAATTGCTCGGAGGCTCAC
CATCGCACAAGACAGCCAGCCGGTGAAAGCTTTCTAGACCAT
BS28307.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:52:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bsg25D-RD | 2310 | CG14025-PD | 1..2310 | 17..2326 | 11550 | 100 | Plus |
| Bsg25D-RC | 3099 | CG14025-PC | 1..2306 | 17..2322 | 11530 | 100 | Plus |
| Bsg25D-RH | 2463 | CG14025-PH | 231..2463 | 94..2326 | 11165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:52:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bsg25D-RD | 2514 | CG14025-RD | 17..2326 | 17..2326 | 11550 | 100 | Plus |
| Bsg25D-RC | 4065 | CG14025-RC | 17..2322 | 17..2322 | 11530 | 100 | Plus |
| Bsg25D-RH | 3010 | CG14025-RH | 590..2822 | 94..2326 | 11165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:52:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5274015..5275781 | 2326..560 | 8835 | 100 | Minus |
| 2L | 23513712 | 2L | 5276933..5277181 | 343..95 | 1245 | 100 | Minus |
| 2L | 23513712 | 2L | 5276512..5276734 | 560..338 | 1115 | 100 | Minus |
| 2L | 23513712 | 2L | 5277247..5277325 | 95..17 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:52:08 has no hits.
BS28307.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 18:06:08 Download gff for
BS28307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg25D-RD | 14..2322 | 17..2325 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:36 Download gff for
BS28307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg25D-RD | 17..2325 | 17..2325 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:39:00 Download gff for
BS28307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg25D-RD | 17..2325 | 17..2325 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:39:00 Download gff for
BS28307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5274016..5275780 | 561..2325 | 100 | <- | Minus |
| 2L | 5276512..5276731 | 341..560 | 100 | <- | Minus |
| 2L | 5276936..5277180 | 96..340 | 100 | <- | Minus |
| 2L | 5277247..5277325 | 17..95 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:36 Download gff for
BS28307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5274016..5275780 | 561..2325 | 100 | <- | Minus |
| arm_2L | 5276512..5276731 | 341..560 | 100 | <- | Minus |
| arm_2L | 5276936..5277180 | 96..340 | 100 | <- | Minus |
| arm_2L | 5277247..5277325 | 17..95 | 100 | | Minus |
BS28307.pep Sequence
Translation from 16 to 2325
> BS28307.pep
MGTRLYYRRSGGQLTDPIIEKLAARFERSLVITDEPLNNTYIESPPESSD
REVSPKLVVGTKKYGRRSRPQQGIYELSVTDSDNTDEDQLQQQQNQRSLN
GCDELGVQVQRSSSQSDLPGSRRLRSVHTSGSKLKRCASLPARRKMNSNT
TGATTSPTAAAKLKQLSIQSQAQHSSSVESLDTVTPQQLETISVHSIMEA
WELASIPNTRNLLHVLGFDEEEEVNLQQLTKALEEELRGIDGDHEQSNML
RALAALQATELGNYRLAYRQQHEENLKLRADNKAANQRVALLAVEVDERH
ASLEDNSKKQVQQLEQRHASMVREITLRMTNDRDHWTSMTGKLEAQLKSL
EQEEIRLRTELELVRTENTELESEQQKAHIQITELLEQNIKLNQELAQTS
SSIGGTPEHSPLRPRRHSEDKEEEMLQLMEKLAALQMENAQLRDKTDELT
IEIESLNVELIRSKTKAKKQEKQEKQEDQESAATATKRRGDSPSKTHLTE
ESPRLGKQRKCTEGEQSDASNSGDWLALNSELQRSQSQDEELTSLRQRVA
ELEEELKAAKEGRSLTPESRSKELETSLEQMQRAYEDCEDYWQTKLSEER
QLFEKERQIYEDEQHESDKKFTELMEKVREYEEQFSKDGRLSPIDERDML
EQQYSELEAEAAQLRSSSIQMLEEKAQEISSLQSEIEDLRQRLGESVEIL
TGACELTSESVAQLSAEAGKSPASSPISYLWLQSTIQEPAKSLADSKDEA
TASAIELLGGSPSHKTASR*
BS28307.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:21:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bsg25D-PD | 769 | CG14025-PD | 1..769 | 1..769 | 3823 | 100 | Plus |
| Bsg25D-PC | 1032 | CG14025-PC | 1..769 | 1..769 | 3823 | 100 | Plus |
| Bsg25D-PF | 1071 | CG14025-PF | 60..820 | 10..769 | 3702 | 98.3 | Plus |
| Bsg25D-PH | 820 | CG14025-PH | 60..820 | 10..769 | 3702 | 98.3 | Plus |
| Bsg25D-PE | 1079 | CG14025-PE | 60..828 | 10..769 | 3694 | 97.3 | Plus |
