BS28308.complete Sequence
755 bp assembled on 2012-03-08
GenBank Submission: KX805873
> BS28308.complete
GAAGTTATCAGTCGACATGAACGGACTGCCGCCGAGCAAGCACTACAACC
TGACGCACTACCAGCAGCGCTACAACTGGGACTGCGGTCTGTCCTGCATC
ATTATGATCCTGTCGGCGCAGCAAAGGGAACAGCTTCTTGGGAACTTTGA
TGCCGTGTGCGGCGAGGAGGGATTTGGCTCGAGCACCTGGACCATCGACC
TGTGCTATCTGCTGATGCGCTACCAGGTGCGCCACGAGTACTTCACCCAA
ACGCTCGGGATCGATCCCAACTACGCGCAGCACACGTACTACTCCAAGAT
CATCGACAAGGACGAACGGCGCGTGACGCGCAAGTTCAAGGACGCCCGGG
CCCATGGACTGCGCGTTGAACAGCGCACCGTGGACATGGAGGTCATTCTG
CGGCATTTGGCCCGCCACGGACCCGTCATCCTGCTGACCAACGCCTCGCT
GCTCACGTGCGAGGTGTGCAAGCGCAATGTCCTAGAGAAGTTCGGCTGTT
TTCATATACCCTGCATTGCTCAAAATACACGCCTCCATGGACCCAAAAGG
TATGCCGGACACTATGTGGTGCTCTGCGGATATGACATGGCCGCCCAGAA
GCTCTTCTACCACAATCCCGAGGTCCACGATGGCCACATTTGTCGCTGCC
TCATCGAGTCCATGGACACGGCCCGACGCGCCTACGGCACGGACGAGGAC
ATCATTTTCATATACGAGAAGAAGGAAACTAGGGAGTAGAAGCTTTCTAG
ACCAT
BS28308.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:39:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13760-RC | 723 | CG13760-PC | 1..723 | 17..739 | 3615 | 100 | Plus |
CG13760-RD | 669 | CG13760-PD | 1..479 | 17..495 | 2395 | 100 | Plus |
CG13760-RD | 669 | CG13760-PD | 479..669 | 549..739 | 955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:39:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13760-RC | 1524 | CG13760-RC | 255..977 | 17..739 | 3615 | 100 | Plus |
CG13760-RD | 1389 | CG13760-RD | 174..652 | 17..495 | 2395 | 100 | Plus |
CG13760-RD | 1389 | CG13760-RD | 652..842 | 549..739 | 955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:39:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2584667..2584939 | 495..223 | 1365 | 100 | Minus |
X | 23542271 | X | 2584995..2585207 | 229..17 | 1065 | 100 | Minus |
X | 23542271 | X | 2584463..2584603 | 635..495 | 705 | 100 | Minus |
X | 23542271 | X | 2584292..2584395 | 739..636 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:39:48 has no hits.
BS28308.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:20 Download gff for
BS28308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13760-RC | 255..977 | 17..739 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:54 Download gff for
BS28308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13760-RC | 255..977 | 17..739 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:15:46 Download gff for
BS28308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13760-RC | 255..977 | 17..739 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:15:46 Download gff for
BS28308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2584998..2585207 | 17..226 | 100 | | Minus |
X | 2584463..2584602 | 496..635 | 100 | <- | Minus |
X | 2584667..2584935 | 227..495 | 100 | <- | Minus |
X | 2584292..2584395 | 636..739 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:54 Download gff for
BS28308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2478325..2478428 | 636..739 | 100 | <- | Minus |
arm_X | 2478496..2478635 | 496..635 | 100 | <- | Minus |
arm_X | 2478700..2478968 | 227..495 | 100 | <- | Minus |
arm_X | 2479031..2479240 | 17..226 | 100 | | Minus |
BS28308.pep Sequence
Translation from 16 to 738
> BS28308.pep
MNGLPPSKHYNLTHYQQRYNWDCGLSCIIMILSAQQREQLLGNFDAVCGE
EGFGSSTWTIDLCYLLMRYQVRHEYFTQTLGIDPNYAQHTYYSKIIDKDE
RRVTRKFKDARAHGLRVEQRTVDMEVILRHLARHGPVILLTNASLLTCEV
CKRNVLEKFGCFHIPCIAQNTRLHGPKRYAGHYVVLCGYDMAAQKLFYHN
PEVHDGHICRCLIESMDTARRAYGTDEDIIFIYEKKETRE*
BS28308.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:50:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13760-PC | 240 | CG13760-PC | 1..240 | 1..240 | 1313 | 100 | Plus |
CG13760-PD | 222 | CG13760-PD | 1..222 | 1..240 | 1177 | 92.5 | Plus |