Clone BS28308 Report

Search the DGRC for BS28308

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:283
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG13760-RC
Protein status:BS28308.pep: full length peptide match
Sequenced Size:755

Clone Sequence Records

BS28308.complete Sequence

755 bp assembled on 2012-03-08

GenBank Submission: KX805873

> BS28308.complete
GAAGTTATCAGTCGACATGAACGGACTGCCGCCGAGCAAGCACTACAACC
TGACGCACTACCAGCAGCGCTACAACTGGGACTGCGGTCTGTCCTGCATC
ATTATGATCCTGTCGGCGCAGCAAAGGGAACAGCTTCTTGGGAACTTTGA
TGCCGTGTGCGGCGAGGAGGGATTTGGCTCGAGCACCTGGACCATCGACC
TGTGCTATCTGCTGATGCGCTACCAGGTGCGCCACGAGTACTTCACCCAA
ACGCTCGGGATCGATCCCAACTACGCGCAGCACACGTACTACTCCAAGAT
CATCGACAAGGACGAACGGCGCGTGACGCGCAAGTTCAAGGACGCCCGGG
CCCATGGACTGCGCGTTGAACAGCGCACCGTGGACATGGAGGTCATTCTG
CGGCATTTGGCCCGCCACGGACCCGTCATCCTGCTGACCAACGCCTCGCT
GCTCACGTGCGAGGTGTGCAAGCGCAATGTCCTAGAGAAGTTCGGCTGTT
TTCATATACCCTGCATTGCTCAAAATACACGCCTCCATGGACCCAAAAGG
TATGCCGGACACTATGTGGTGCTCTGCGGATATGACATGGCCGCCCAGAA
GCTCTTCTACCACAATCCCGAGGTCCACGATGGCCACATTTGTCGCTGCC
TCATCGAGTCCATGGACACGGCCCGACGCGCCTACGGCACGGACGAGGAC
ATCATTTTCATATACGAGAAGAAGGAAACTAGGGAGTAGAAGCTTTCTAG
ACCAT

BS28308.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG13760-RC 723 CG13760-PC 1..723 17..739 3615 100 Plus
CG13760-RD 669 CG13760-PD 1..479 17..495 2395 100 Plus
CG13760-RD 669 CG13760-PD 479..669 549..739 955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:39:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG13760-RC 1524 CG13760-RC 255..977 17..739 3615 100 Plus
CG13760-RD 1389 CG13760-RD 174..652 17..495 2395 100 Plus
CG13760-RD 1389 CG13760-RD 652..842 549..739 955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2584667..2584939 495..223 1365 100 Minus
X 23542271 X 2584995..2585207 229..17 1065 100 Minus
X 23542271 X 2584463..2584603 635..495 705 100 Minus
X 23542271 X 2584292..2584395 739..636 520 100 Minus
Blast to na_te.dros performed on 2014-11-28 05:39:48 has no hits.

BS28308.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:20 Download gff for BS28308.complete
Subject Subject Range Query Range Percent Splice Strand
CG13760-RC 255..977 17..739 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:54 Download gff for BS28308.complete
Subject Subject Range Query Range Percent Splice Strand
CG13760-RC 255..977 17..739 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:15:46 Download gff for BS28308.complete
Subject Subject Range Query Range Percent Splice Strand
CG13760-RC 255..977 17..739 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:15:46 Download gff for BS28308.complete
Subject Subject Range Query Range Percent Splice Strand
X 2584998..2585207 17..226 100   Minus
X 2584463..2584602 496..635 100 <- Minus
X 2584667..2584935 227..495 100 <- Minus
X 2584292..2584395 636..739 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:54 Download gff for BS28308.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2478325..2478428 636..739 100 <- Minus
arm_X 2478496..2478635 496..635 100 <- Minus
arm_X 2478700..2478968 227..495 100 <- Minus
arm_X 2479031..2479240 17..226 100   Minus

BS28308.pep Sequence

Translation from 16 to 738

> BS28308.pep
MNGLPPSKHYNLTHYQQRYNWDCGLSCIIMILSAQQREQLLGNFDAVCGE
EGFGSSTWTIDLCYLLMRYQVRHEYFTQTLGIDPNYAQHTYYSKIIDKDE
RRVTRKFKDARAHGLRVEQRTVDMEVILRHLARHGPVILLTNASLLTCEV
CKRNVLEKFGCFHIPCIAQNTRLHGPKRYAGHYVVLCGYDMAAQKLFYHN
PEVHDGHICRCLIESMDTARRAYGTDEDIIFIYEKKETRE*

BS28308.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG13760-PC 240 CG13760-PC 1..240 1..240 1313 100 Plus
CG13760-PD 222 CG13760-PD 1..222 1..240 1177 92.5 Plus