BS28309.complete Sequence
1055 bp assembled on 2012-03-08
GenBank Submission: KX804114
> BS28309.complete
GAAGTTATCAGTCGACATGAGGCCATACCAAGTAGTTTGCATCGTAGTAG
CAGCTCTGCTGCTTTTGGAGGCGATTCCCGCGGATGCAAAGCGGCGCAAG
CACAAGGGCTCCGATCATCACTATGAAAAGTCTGATCCCCACAAGACCAA
GACAAAGACCAAGTGGTCTAGCTCCACGGATTTGGCTGGAAACACTCCAA
TTTCCACCGAAGAGCACGGCTACTATGTAAAGCGCACCTTTGCGGCTCCC
GGTGAGATTGGAGCCGCACAGAAGCGTCTAAGTCCCCCCTATTTGGCCAT
TCCCATCGCCTGGTTCAGCTGTGAGTCGGGCCAGAAGAATTGCCAGTCTT
CCAATTCCGCGGCTATCAACAGTGCCGCGCAGTCCTTGAGCGAGGGCTAT
CTGTGCGACGATGATTGCGATGAACTGTACGAGCCCATCTGCGGCAGGAC
CACCTCAGAGGTGGCCGTTTTCTACAACAAGTGCAAGTTGGGTGTAGCCA
AGTGCCGATCCCACGGTCTTTGGACGGACTTCGCCTATGCCGAGTGCCAG
GCGAAATATCCGCAGGAAACTGCCTATGCCGACAAGAAGTTCCGGTCATC
GCCTTATTTCCGGGATGCGGCCATCGTGGAGCAATTGAAGCTGGAGGAGG
AGAAGCGTAAGCAGGAGGAGGAACAACACAAGCTGGAGAAGGAGCAAAAG
AAGAAGGAGAAGGCTGAGAAAAATAAGAACGAGAAGGACAGCAGCGAAAG
CAGCGAGGAGAAGGATGACCAAAAGGAAAACAAGCAGAAGGATCCCCTTT
CCCTAATGCCACAGAAGAAAGTGGAATCCACCCAGAAGCCAGTGCCAGTT
CCTATTCAAGTAGCAGTTCCAAAACCAGTTTCAGTTTTGGAGCCTGCAAA
GACGACCGAGGACATCGCTATGCCGCCTATGCCACTGAAGGACACTCCCA
CGCCCAAACCTCTGGAGATCGCGCCCCTTCACCAGCAGACCCAACCCAAG
GGCAAGGACATTGATAGGCTCAAGTACCAAGTAGCTTAGAAGCTTTCTAG
ACCAT
BS28309.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:40:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ImpL1-RC | 1023 | CG10717-PC | 1..1023 | 17..1039 | 5115 | 100 | Plus |
| ImpL1-RA | 1026 | CG10717-PA | 1..1026 | 17..1039 | 5050 | 99.7 | Plus |
| ImpL1-RB | 1101 | CG10717-PB | 108..1101 | 46..1039 | 4970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:40:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ImpL1-RC | 1157 | CG10717-RC | 39..1065 | 15..1041 | 5135 | 100 | Plus |
| ImpL1-RA | 1160 | CG10717-RA | 39..1068 | 15..1041 | 5070 | 99.7 | Plus |
| ImpL1-RB | 1230 | CG10717-RB | 143..1138 | 46..1041 | 4980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:40:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13382912..13383907 | 46..1041 | 4980 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 05:40:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-C | 11124 | TART-C TARTC 11124bp | 8767..8891 | 638..756 | 117 | 56.8 | Plus |
BS28309.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:20 Download gff for
BS28309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ImpL1-RC | 49..1071 | 17..1039 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:01 Download gff for
BS28309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ImpL1-RC | 41..1063 | 17..1039 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:16:11 Download gff for
BS28309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ImpL1-RC | 41..1063 | 17..1039 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:16:11 Download gff for
BS28309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13382805..13382835 | 17..47 | 100 | -> | Plus |
| 3L | 13382914..13383905 | 48..1039 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:01 Download gff for
BS28309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13375905..13375935 | 17..47 | 100 | -> | Plus |
| arm_3L | 13376014..13377005 | 48..1039 | 100 | | Plus |
BS28309.pep Sequence
Translation from 16 to 1038
> BS28309.pep
MRPYQVVCIVVAALLLLEAIPADAKRRKHKGSDHHYEKSDPHKTKTKTKW
SSSTDLAGNTPISTEEHGYYVKRTFAAPGEIGAAQKRLSPPYLAIPIAWF
SCESGQKNCQSSNSAAINSAAQSLSEGYLCDDDCDELYEPICGRTTSEVA
VFYNKCKLGVAKCRSHGLWTDFAYAECQAKYPQETAYADKKFRSSPYFRD
AAIVEQLKLEEEKRKQEEEQHKLEKEQKKKEKAEKNKNEKDSSESSEEKD
DQKENKQKDPLSLMPQKKVESTQKPVPVPIQVAVPKPVSVLEPAKTTEDI
AMPPMPLKDTPTPKPLEIAPLHQQTQPKGKDIDRLKYQVA*
BS28309.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:50:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ImpL1-PC | 340 | CG10717-PC | 1..340 | 1..340 | 1793 | 100 | Plus |
| ImpL1-PA | 341 | CG10717-PA | 1..341 | 1..340 | 1781 | 99.7 | Plus |
| ImpL1-PB | 366 | CG10717-PB | 1..366 | 1..340 | 1756 | 92.9 | Plus |
