BS28312.complete Sequence
3410 bp assembled on 2012-04-11
GenBank Submission: KX802318
> BS28312.complete
GAAGTTATCAGTCGACATGGATATGGATTTGGAGCAGCTAAAGAACGACT
TCCTGCCGCTTATCGCCGGGATCAAGCAGGAGCAGCTGGATGCCGTGCCC
ACGGATGCCCTGCCCCAGATGAGCACACCAAACACGGCCAGCGGTGCGCC
CACAACCTCGTCATTGAGCTCCTCTTCGCTGAGTCTGAGCAACCCCTGCG
ACAGTGCCGAGAAAAGGTCGGAGTCAAACTCTTCGGCATCAGCCAAGTTT
ACCCTTTTCAAGTGCGTTTACTGCGCTCAACTCCTCGGATCCAACGATCG
CCCCAAGCTGTTAGAATGCCTTCACGTGGCCTGTGCCCAGTGCGTGAGCA
CCAAGTTCTCAGAGCTGGACCGTTCCCTGCCACCATTGATCCATTGTCCG
GTATGCGACAATGCGTCGCAGCAGGAGTTCATCGTGGACAACCAGTTCCT
CATTGAGCAGTGCACCGCCGGAGACAGTGGCGATGGGGTCGGACTTCTGG
GTCTGACTGGCGAAGGTCAGAAGAGTTCCGCTGCGGCGAGCATCCAGTGC
AGCAGCTGCTCCGATGGTGCGGTGGCCACGTCGTGGTGCGTTGACTGCTC
GGAGTATATTTGCGACAGTTGTGTGCAAGCTCACCAGCGCCTGAAGATCA
CCAAGGATCACACGATCAAGCCCAAAGATGAGGCCAACAACGAGCAGCTG
GCCGGAGCTGCCGGGGTGGACAAGTTGCACATGTGCCAGTTGCATCCGCA
GGAGAAGCTTTCGCTATTTTGCGAGACCTGCGACAAGCTCACTTGTCGGG
ATTGCCAGTTGAGCGACCATCGGGATCACAAATACAAGTTTGCGCACGAG
ATTGCCACGGAATCGCGACAGGCGCTGTCCACACTCGTTTCCGAAATCAA
CTACAAACGCTTCCTTCTCTCCTCGGCAACCAAGGTTATTGATGACCGCC
AACAGCTGATCCACGACAAGAAGAAAGACCTCATCAAGGAGATCACAGCC
ATGGCGGTGAAGATCACCAATACGGTCAATACCCGAGGCAAGCAGCTAAT
CATGAGATTGAACGAGGTGTGCGACAGTAAACTCAAGGTGCTGGTGGAAA
AGAAGGAGACGCTGCAGTTGCTCTCCGACAACACGGACCACTGCATCGAT
TTTATGCAAAACGCTTTGGAGAAGGGCAGTGATTTCGCCATCCTCTCGAG
CAAAAAGTCTCTGGTGCGTCACCTGCAGAAGCTGAAGTGCCAACGGGCGG
ATATTCCAAATCCGGAAATCCCAGTGCGCATTCAGGTGCAGCTTAATCAG
GTTTCCGATCTGCAGAAGGTAATCTCCCAGCTGGGCATCATTATCGTCGA
TGGCAAACCATATCCGCCCACACCGTCGCCCAACGGAACCCCTCAGCCGC
AACACCCACCGCGCCAGCCTCCTAGCCCGAACATGGCTCCACCCCTGCGT
CCTGGTCTTCCACCCGGAATGCCAGCTGGCCTCTCGCCGAACGGACCGCC
CGTCAACTTCGGACCGCAGAACGGACCGCCGCTCTACAGCAATGCTGCCC
AGCAGCAATTCAACAATCTGTCCATGAGTCGCTCCTTTCCGGGTGACGGG
TCAGTTCGGTTCGGGGGAATGCCGCCAGTGGGCATGCAGCGACACGGACA
ACCGCACGTGAGCTCCTCCACACATCCGCAGAATATGGACATCAGCCTGC
GGGGCCTACTGAACAACCAGGCGGCGCAGAGCCCGAATGCCCACATGGCA
TTTAATGGACCGCCCAGCTATCCGGGTGGGCCGCAAGGAGCACCGGCTCC
GGCCCACCAACCGATGGGCCCGCAGATGCGTCCGCATTTCATGCCCGGCC
AGCAGGGTTTCTCGCAGGGCGGTGGACCAGGAGGCGGTCCGCGGGACGCC
AACTTTATGAACAGCAACGCGCGCTTCCAGTCGCAGTATCAGCGTATGGC
CAACCACGCTCAGCAGGCGGCGGCTGCGGCGGCCATGGCCGGTGCGGCGG
GGGGCGGAGGCGGCCAAATCCCTTCGCCGGGTGCACTGCAGCGACCGCAG
ATGATGTCCAATCCCATGCAGAATTCGTTGGGGTTTCATGGGAGCCAGGC
TGGCTTTAATACCGGCCCACCACAGACCTCCCCGCAGTTAGGCGGCGGAG
GCATGCACAGCCTGGCCAAGTGGCACATCCCGCAATCCGCGCAACAGTCG
AACATGTGTTCGCAACAAGGCCCCCTTTTGCCTTTTGCGAATGGCCGCCA
GACATCGGAAAATTTTAAAATCTCACTTAAATCTCCCAACACGCTCAAAA
ATAGCACCCCGCCCAGCCTGGGGGGCGGTGGTGCGGGTCACCAGGGCCAC
GGAAACGGCTCCTCCAGCGCCCAACTGAACGCAGCTGCTCTGGGATTGGG
GCCAGCCGTTTCGATACTCTCCAATGTCACCTCGACGAATCCAAAGACGC
CCAGTCCCAGTACTCATGAGAACACCAAGGACTTCACCGAACCCATTGAC
AAGGTGCGAGATGACTCAATCAACGATCTAATTGCAACCATAGCCAAACT
GGACTCGAATGGGGTGCAGGTATTGCCGGAGGGTCGGACAAAGACCACCT
CGCCGCAGGTGCACAGCTCGACGGATCTGTCCAACACACAGGAAGTTAAT
AATAAAAACGAACAAAAAGATGATCCCAACGAGGACTGGTGCGCCGTCTG
TCTGGATGGAGGCGAGCTGATGTGCTGCGACAAGTGTCCCAAAGTTTTCC
ATCAGAACTGTCACATCCCTGCGATCAGCTCGTTGCCGGACGAGAGCGAG
AGCTGGCAGTGCCTACTGTGCGTCAACATCAAGGAGCTGACAAAGACGGA
GGGAAGTGAAAAGAGCTCCTCCGGCGAGCTGAGCGCCCTCGAACTCCGCA
TCTTGCAGCGCATCTGCCTAGAATTGTACTGCCAGTACGAGCAGAGTCTC
AACTTCCGGGAGCCGGAGTCGCCAGCCAATACATCCTACTACGAGATTGT
TTCCAGTCCCATGTCTCTAGATGTTATTCGCACCCGCCTGGATCCATCCA
GTCCGAATCACTACAAGGACATTGCAGGCTTCGTGTCCGACGTGCGTTTA
ATATTCTCCAACACATACCTCTTTTACCAGGAGGACACGAAAACTTACTC
CAATGCCAAGTACTTGGAAAATTTCTTCGAGGAGCAGCTGGCCAAGTGGT
TGCCGCAATTTGAGGGCACCAAGCCGCAGGGTAAGCGAAATACCTCAAAC
TCGCCGGCGCTGTTAGGTGTGAATGCAACTGGTTCGCCGTCGCCCATCGA
GAACGGACGGAAGAGCTGCGGCTCGGCATCATTGGGTGACAGCGATGGTG
CCTGCTTGCCGGCCAAGAGGGCGAGACGCTCGGCGCACGAATAGAAGCTT
TCTAGACCAT
BS28312.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:38:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bon-RB | 3378 | CG5206-PB | 1..3378 | 17..3394 | 16860 | 99.9 | Plus |
| bon-RC | 3624 | CG5206-PC | 1..3404 | 17..3396 | 16560 | 99.2 | Plus |
| bon-RA | 3402 | CG5206-PA | 1..3402 | 17..3394 | 16550 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:38:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bon-RB | 4871 | CG5206-RB | 704..4085 | 15..3396 | 16880 | 99.9 | Plus |
| bon-RC | 5811 | CG5206-RC | 704..4109 | 15..3396 | 16570 | 99.2 | Plus |
| bon-RA | 5811 | CG5206-RA | 704..4109 | 15..3396 | 16570 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:37:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20606280..20607667 | 217..1604 | 6940 | 100 | Plus |
| 3R | 32079331 | 3R | 20608149..20608535 | 1688..2074 | 1935 | 100 | Plus |
| 3R | 32079331 | 3R | 20609938..20610300 | 2644..3006 | 1815 | 100 | Plus |
| 3R | 32079331 | 3R | 20610571..20610838 | 3129..3396 | 1340 | 100 | Plus |
| 3R | 32079331 | 3R | 20608896..20609161 | 2205..2470 | 1315 | 99.6 | Plus |
| 3R | 32079331 | 3R | 20593842..20594044 | 15..217 | 1015 | 100 | Plus |
| 3R | 32079331 | 3R | 20609224..20609404 | 2469..2649 | 875 | 98.9 | Plus |
| 3R | 32079331 | 3R | 20608632..20608761 | 2075..2204 | 650 | 100 | Plus |
| 3R | 32079331 | 3R | 20610384..20610511 | 3004..3131 | 640 | 100 | Plus |
| 3R | 32079331 | 3R | 20607992..20608078 | 1602..1688 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:37:59 has no hits.
BS28312.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 12:37:31 Download gff for
BS28312.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bon-RB | 686..4063 | 17..3394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:22 Download gff for
BS28312.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bon-RB | 706..4083 | 17..3394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:33:22 Download gff for
BS28312.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bon-RB | 706..4083 | 17..3394 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:33:22 Download gff for
BS28312.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20593844..20594044 | 17..217 | 100 | -> | Plus |
| 3R | 20606281..20607667 | 218..1604 | 100 | -> | Plus |
| 3R | 20607995..20608078 | 1605..1688 | 100 | -> | Plus |
| 3R | 20608150..20608535 | 1689..2074 | 100 | -> | Plus |
| 3R | 20608632..20608761 | 2075..2204 | 100 | -> | Plus |
| 3R | 20608896..20609161 | 2205..2470 | 99 | -> | Plus |
| 3R | 20609226..20609400 | 2471..2645 | 99 | -> | Plus |
| 3R | 20609940..20610300 | 2646..3006 | 100 | -> | Plus |
| 3R | 20610387..20610510 | 3007..3130 | 100 | -> | Plus |
| 3R | 20610573..20610836 | 3131..3394 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:22 Download gff for
BS28312.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16419566..16419766 | 17..217 | 100 | -> | Plus |
| arm_3R | 16432003..16433389 | 218..1604 | 100 | -> | Plus |
| arm_3R | 16433717..16433800 | 1605..1688 | 100 | -> | Plus |
| arm_3R | 16433872..16434257 | 1689..2074 | 100 | -> | Plus |
| arm_3R | 16434354..16434483 | 2075..2204 | 100 | -> | Plus |
| arm_3R | 16434618..16434883 | 2205..2470 | 99 | -> | Plus |
| arm_3R | 16434948..16435122 | 2471..2645 | 99 | -> | Plus |
| arm_3R | 16435662..16436022 | 2646..3006 | 100 | -> | Plus |
| arm_3R | 16436109..16436232 | 3007..3130 | 100 | -> | Plus |
| arm_3R | 16436295..16436558 | 3131..3394 | 100 | | Plus |
BS28312.pep Sequence
Translation from 16 to 3393
> BS28312.pep
MDMDLEQLKNDFLPLIAGIKQEQLDAVPTDALPQMSTPNTASGAPTTSSL
SSSSLSLSNPCDSAEKRSESNSSASAKFTLFKCVYCAQLLGSNDRPKLLE
CLHVACAQCVSTKFSELDRSLPPLIHCPVCDNASQQEFIVDNQFLIEQCT
AGDSGDGVGLLGLTGEGQKSSAAASIQCSSCSDGAVATSWCVDCSEYICD
SCVQAHQRLKITKDHTIKPKDEANNEQLAGAAGVDKLHMCQLHPQEKLSL
FCETCDKLTCRDCQLSDHRDHKYKFAHEIATESRQALSTLVSEINYKRFL
LSSATKVIDDRQQLIHDKKKDLIKEITAMAVKITNTVNTRGKQLIMRLNE
VCDSKLKVLVEKKETLQLLSDNTDHCIDFMQNALEKGSDFAILSSKKSLV
RHLQKLKCQRADIPNPEIPVRIQVQLNQVSDLQKVISQLGIIIVDGKPYP
PTPSPNGTPQPQHPPRQPPSPNMAPPLRPGLPPGMPAGLSPNGPPVNFGP
QNGPPLYSNAAQQQFNNLSMSRSFPGDGSVRFGGMPPVGMQRHGQPHVSS
STHPQNMDISLRGLLNNQAAQSPNAHMAFNGPPSYPGGPQGAPAPAHQPM
GPQMRPHFMPGQQGFSQGGGPGGGPRDANFMNSNARFQSQYQRMANHAQQ
AAAAAAMAGAAGGGGGQIPSPGALQRPQMMSNPMQNSLGFHGSQAGFNTG
PPQTSPQLGGGGMHSLAKWHIPQSAQQSNMCSQQGPLLPFANGRQTSENF
KISLKSPNTLKNSTPPSLGGGGAGHQGHGNGSSSAQLNAAALGLGPAVSI
LSNVTSTNPKTPSPSTHENTKDFTEPIDKVRDDSINDLIATIAKLDSNGV
QVLPEGRTKTTSPQVHSSTDLSNTQEVNNKNEQKDDPNEDWCAVCLDGGE
LMCCDKCPKVFHQNCHIPAISSLPDESESWQCLLCVNIKELTKTEGSEKS
SSGELSALELRILQRICLELYCQYEQSLNFREPESPANTSYYEIVSSPMS
LDVIRTRLDPSSPNHYKDIAGFVSDVRLIFSNTYLFYQEDTKTYSNAKYL
ENFFEEQLAKWLPQFEGTKPQGKRNTSNSPALLGVNATGSPSPIENGRKS
CGSASLGDSDGACLPAKRARRSAHE*
BS28312.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:18:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bon-PB | 1125 | CG5206-PB | 1..1125 | 1..1125 | 5961 | 100 | Plus |
| bon-PC | 1207 | CG5206-PC | 1..1133 | 1..1125 | 5931 | 99.3 | Plus |
| bon-PA | 1133 | CG5206-PA | 1..1133 | 1..1125 | 5931 | 99.3 | Plus |
| bon-PD | 1119 | CG5206-PD | 1..1119 | 1..1125 | 5887 | 99.1 | Plus |
| bon-PE | 1125 | CG5206-PE | 1..1125 | 1..1125 | 5870 | 98.6 | Plus |
