BS28315.complete Sequence
1820 bp assembled on 2012-04-11
GenBank Submission: KX801530
> BS28315.complete
GAAGTTATCAGTCGACATGTTATCTGCGCTCCGGCTAATCTTCCTGGGCG
CTCTGCTCGGCGCCTCTGTTTGCGCCTCCCCCATTGAGTTCGTAATGGAC
ACCAGCCTAAATGGCTCTCGATCTGATCCTGCGACTGCAACCCACCCTGG
CAAATGGCCACCGACGACCAAAGCGCCGGCGCTCAGGGCTCCAGCTGGAA
CAGCTGGACATGCTTATCAGTCGCCATCGTCGTCGCTGGCCGCTGATAAC
AGAAGCCACGACAACAACAACGCTAGCGCCGTGTCCATGCTGCTGCCGCA
AGACGGCGACGCATCTGGAGCTGTGGCCCCTGCTGTTACTCCCCAGCTGC
CCATCTACATTGCTCAGCCTAGCGCGAAAAAGCCAGAAAACAAGATAAAA
TGCCACTGTGACACGTGCAAGGAATCGAACAATATATGTGAAACGGACGG
CTTTTGTTTCACGTCCGTGGAGAAGAACTCTGATGGGAGCATCATCTTCA
GCTACAGATGCATAACAGACCAGTTGCCACCTGAAGATCCTACCTCGTGC
AAGTTAAATTCGGAAGCGGGCTCTTCTCAGTGCTGCGCCGAAGATTTTTG
CAATACGCGTGAGAATTACAGTGGTGTCCTACCAGATTATGTGCCACACC
GACTGACCAGCTGGGAGTTTGTGGCTATCATCCTAGGGGCCACCCTCTTC
ATTTGCTTCACGGGCACCAGTACGTGGTATTATTGCCAGCGTCGCAAGCG
AATGGCTAGCGGAAGGACGTTTGCCAAGGAGGATTCGGCGTACGATCCTA
TTTTGAATGGTAATACAACCATACACGACATCATTGAGATGACCACCTCT
GGTTCGGGTTCGGCTGGTCTTCCGCTGCTGGTGCAGCGTTCCATTGCCCG
ACAGGTGCAGCTGTGCCACGTTATCGGAAAGGGACGTTTCGGCGAGGTCT
GGCGTGGACGCTGGCGAGGCGAAAACGTGGCGGTCAAGATCTTCTCTAGT
CGCGAGGAGTGTTCCTGGTTCCGTGAGGCGGAAATCTATCAGACTGTTAT
GCTCCGCCACGAGAACATTTTGGGATTCATAGCTGCAGACAACAAGGACA
ATGGAACTTGGACACAGTTGTGGCTCGTAACAGACTACCATGAAAACGGA
TCGCTCTTTGACTACCTAACCACGCACCCAGTGGACACCAACACCATGCT
GAACATGTCGCTGAGTATTGCCACTGGACTGGCGCATCTGCATATGGACA
TTGTGGGCACTCGCGGCAAGCCCGCCATCGCCCATCGTGATCTCAAATCC
AAAAACATACTGGTCAAATCAAATCTAAGCTGTGCTATTGGAGATTTGGG
TCTGGCCGTGCGCCATGTGGAGAAGAATGACTCTGTGGACATACCTTCCA
CTCATCGCGTGGGTACCAAGCGCTATATGGCGCCCGAGGTGCTGGACGAG
AGTATGAATGATCAGCATTTTGACTCGTACAAGCGGGCGGATGTGTACGC
CTTTGGACTGATTCTCTGGGAGATTGCGCGTCGCTGCAACATGGGCATGA
TATACGATGAGTATCAATTGCCGTATTACGATGTCGTGCAACCTGATCCC
AGCATTGAGGAGATGAAGAAGGTGGTTTGCATCGAGAAGTGCCGGCCAAA
CATTCCAAACCGCTGGCACGCCTCCGATGTGCTCCACAACATGGCCAAGG
TGATGAAGGAGTGCTGGTATCCCAATCCTGTGGCCCGATTGACAGCGCTT
CGCATCAAAAAGACACTTGCTAGCATCAGTGTGGAGGACAAGGTCAAGAA
CTGAAAGCTTTCTAGACCAT
BS28315.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:38:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| babo-RC | 1788 | CG8224-PC | 1..1788 | 17..1804 | 8940 | 100 | Plus |
| babo-RA | 1806 | CG8224-PA | 635..1806 | 633..1804 | 5860 | 100 | Plus |
| babo-RB | 1869 | CG8224-PB | 699..1869 | 634..1804 | 5855 | 100 | Plus |
| babo-RA | 1806 | CG8224-PA | 1..497 | 17..513 | 2470 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:38:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| babo-RC | 4758 | CG8224-RC | 632..2421 | 15..1804 | 8950 | 100 | Plus |
| babo-RA | 4776 | CG8224-RA | 1268..2439 | 633..1804 | 5860 | 100 | Plus |
| babo-RB | 4839 | CG8224-RB | 1332..2502 | 634..1804 | 5855 | 100 | Plus |
| babo-RA | 4776 | CG8224-RA | 632..1130 | 15..513 | 2480 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:38:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8959689..8960216 | 1097..1624 | 2640 | 100 | Plus |
| 2R | 25286936 | 2R | 8953102..8953417 | 74..389 | 1580 | 100 | Plus |
| 2R | 25286936 | 2R | 8959395..8959633 | 859..1097 | 1180 | 99.6 | Plus |
| 2R | 25286936 | 2R | 8959103..8959334 | 632..863 | 1160 | 100 | Plus |
| 2R | 25286936 | 2R | 8960274..8960459 | 1619..1804 | 930 | 100 | Plus |
| 2R | 25286936 | 2R | 8957027..8957156 | 506..635 | 650 | 100 | Plus |
| 2R | 25286936 | 2R | 8954734..8954851 | 390..507 | 590 | 100 | Plus |
| 2R | 25286936 | 2R | 8952970..8953029 | 15..74 | 300 | 100 | Plus |
| 2L | 23513712 | 2L | 5220790..5220953 | 1140..977 | 220 | 75.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:38:20 has no hits.
BS28315.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 12:37:32 Download gff for
BS28315.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| babo-RC | 637..2418 | 22..1803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:25 Download gff for
BS28315.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| babo-RC | 639..2420 | 22..1803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:33:31 Download gff for
BS28315.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| babo-RC | 639..2420 | 22..1803 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:33:31 Download gff for
BS28315.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8952977..8953029 | 22..74 | 100 | -> | Plus |
| 2R | 8953103..8953417 | 75..389 | 100 | -> | Plus |
| 2R | 8954734..8954851 | 390..507 | 100 | -> | Plus |
| 2R | 8957029..8957156 | 508..635 | 100 | -> | Plus |
| 2R | 8959107..8959334 | 636..863 | 100 | -> | Plus |
| 2R | 8959400..8959633 | 864..1097 | 100 | -> | Plus |
| 2R | 8959690..8960213 | 1098..1621 | 100 | -> | Plus |
| 2R | 8960277..8960458 | 1622..1803 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:25 Download gff for
BS28315.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4840482..4840534 | 22..74 | 100 | -> | Plus |
| arm_2R | 4840608..4840922 | 75..389 | 100 | -> | Plus |
| arm_2R | 4842239..4842356 | 390..507 | 100 | -> | Plus |
| arm_2R | 4844534..4844661 | 508..635 | 100 | -> | Plus |
| arm_2R | 4846612..4846839 | 636..863 | 100 | -> | Plus |
| arm_2R | 4846905..4847138 | 864..1097 | 100 | -> | Plus |
| arm_2R | 4847195..4847718 | 1098..1621 | 100 | -> | Plus |
| arm_2R | 4847782..4847963 | 1622..1803 | 100 | | Plus |
BS28315.pep Sequence
Translation from 16 to 1803
> BS28315.pep
MLSALRLIFLGALLGASVCASPIEFVMDTSLNGSRSDPATATHPGKWPPT
TKAPALRAPAGTAGHAYQSPSSSLAADNRSHDNNNASAVSMLLPQDGDAS
GAVAPAVTPQLPIYIAQPSAKKPENKIKCHCDTCKESNNICETDGFCFTS
VEKNSDGSIIFSYRCITDQLPPEDPTSCKLNSEAGSSQCCAEDFCNTREN
YSGVLPDYVPHRLTSWEFVAIILGATLFICFTGTSTWYYCQRRKRMASGR
TFAKEDSAYDPILNGNTTIHDIIEMTTSGSGSAGLPLLVQRSIARQVQLC
HVIGKGRFGEVWRGRWRGENVAVKIFSSREECSWFREAEIYQTVMLRHEN
ILGFIAADNKDNGTWTQLWLVTDYHENGSLFDYLTTHPVDTNTMLNMSLS
IATGLAHLHMDIVGTRGKPAIAHRDLKSKNILVKSNLSCAIGDLGLAVRH
VEKNDSVDIPSTHRVGTKRYMAPEVLDESMNDQHFDSYKRADVYAFGLIL
WEIARRCNMGMIYDEYQLPYYDVVQPDPSIEEMKKVVCIEKCRPNIPNRW
HASDVLHNMAKVMKECWYPNPVARLTALRIKKTLASISVEDKVKN*
BS28315.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:18:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| babo-PC | 595 | CG8224-PC | 1..595 | 1..595 | 3178 | 100 | Plus |
| babo-PA | 601 | CG8224-PA | 1..601 | 1..595 | 2961 | 93.7 | Plus |
| babo-PB | 622 | CG8224-PB | 1..622 | 1..595 | 2935 | 90.8 | Plus |
| sax-PB | 535 | CG1891-PB | 20..527 | 123..594 | 1066 | 45.2 | Plus |
| sax-PA | 570 | CG1891-PA | 55..562 | 123..594 | 1066 | 45.2 | Plus |
