BS28318.complete Sequence
890 bp assembled on 2012-03-08
GenBank Submission: KX802903
> BS28318.complete
GAAGTTATCAGTCGACATGGGTCAAAAGGCGAGCACTCCGGCGACCAGTG
GCCAACAGAGCCCACGCTCCAGGACATTCTCGAGCAGTTCAACAGGAGCC
GCCGATTCTGCGCTGCAGCAGCAGCAACACCAGCACTCGAATCCCGGCCA
GAATCGTGGCGGTAACGGCGGCGGCGGTGGCGGCAATGATACCACCGGTC
AGGGTTTCAATCTGCTGCGCACTTTGCCCGGCCTGCAGGTGTACCACAAC
CAAAACTCCACGTCCATCGATCGCCAGCGGGCGCGGAGTCTCAGCTCCGT
GCCGGATATACAGCAGCAGGCGCAGCAGCAGCAGCAACAGGGATCGATCA
CCTCGTCCGGCAGCAGTCCGCATTCGCATCCGCATGCCGCGCACGGCCAT
CCGGCCGTCGGTGTCACCGTATCCGTGTCCGGTAATGCGAATGCCAATAG
CAACAGCAACTTCACAGCCGCCGGGAACAACAATGGATCCGCCATGCAGT
CCTACATGCAGCAGAGACGCACTCTCGGCGATTCCATAAGGGACATGTCA
ATGACCGGCGGCAGCATCGCCGAGAGCATCGCCCTGGCCGCTTCCGCCAC
GTCCGCCAATGGGATCGGTCGTGTCTACACGGCCACCTCGCTTCCATCGC
ACATTTGGTCCTTCAATGGTATCAAGTGTCCCGTGTGCAATAAGTTTGTG
TTGCCAGACGACATCGAATGCCATTTAGTCATGTGCCTAACGAAACCACG
ACTCTCATATAACGAGGACGTACTCTCGGACGCCAAGGGCGAGTGCGTCA
TTTGCCTGGAGGATCTGAGTCCGGGGGACACCATCGCCCGGCTGCCATGC
CTCTGCATATATCACAAAGGGTGAAAGCTTTCTAGACCAT
BS28318.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:48:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14435-RC | 912 | CG14435-PC | 1..854 | 17..870 | 4270 | 100 | Plus |
| CG14435-RA | 912 | CG14435-PA | 1..854 | 17..870 | 4270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:48:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14435-RC | 3831 | CG14435-RC | 876..1729 | 17..870 | 4270 | 100 | Plus |
| CG14435-RA | 2573 | CG14435-RA | 876..1729 | 17..870 | 4270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:48:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6842521..6843046 | 542..17 | 2630 | 100 | Minus |
| X | 23542271 | X | 6841825..6841954 | 670..541 | 650 | 100 | Minus |
| X | 23542271 | X | 6841465..6841575 | 874..764 | 555 | 100 | Minus |
| X | 23542271 | X | 6841653..6841749 | 764..668 | 485 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 05:48:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-C | 11124 | TART-C TARTC 11124bp | 9180..9219 | 114..156 | 117 | 81.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6824..6868 | 90..136 | 113 | 74.5 | Plus |
BS28318.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:25 Download gff for
BS28318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14435-RB | 875..1731 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:31 Download gff for
BS28318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14435-RA | 876..1732 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:18:46 Download gff for
BS28318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14435-RA | 876..1732 | 17..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:18:46 Download gff for
BS28318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6841466..6841574 | 765..873 | 100 | <- | Minus |
| X | 6841653..6841748 | 669..764 | 100 | <- | Minus |
| X | 6841827..6841953 | 542..668 | 100 | <- | Minus |
| X | 6842522..6843046 | 17..541 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:31 Download gff for
BS28318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6735499..6735607 | 765..873 | 100 | <- | Minus |
| arm_X | 6735686..6735781 | 669..764 | 100 | <- | Minus |
| arm_X | 6735860..6735986 | 542..668 | 100 | <- | Minus |
| arm_X | 6736555..6737079 | 17..541 | 100 | | Minus |
BS28318.pep Sequence
Translation from 16 to 873
> BS28318.pep
MGQKASTPATSGQQSPRSRTFSSSSTGAADSALQQQQHQHSNPGQNRGGN
GGGGGGNDTTGQGFNLLRTLPGLQVYHNQNSTSIDRQRARSLSSVPDIQQ
QAQQQQQQGSITSSGSSPHSHPHAAHGHPAVGVTVSVSGNANANSNSNFT
AAGNNNGSAMQSYMQQRRTLGDSIRDMSMTGGSIAESIALAASATSANGI
GRVYTATSLPSHIWSFNGIKCPVCNKFVLPDDIECHLVMCLTKPRLSYNE
DVLSDAKGECVICLEDLSPGDTIARLPCLCIYHKG*
BS28318.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:50:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14435-PC | 303 | CG14435-PC | 1..285 | 1..285 | 1495 | 100 | Plus |
| CG14435-PA | 303 | CG14435-PA | 1..285 | 1..285 | 1495 | 100 | Plus |
