BS28319.complete Sequence
3359 bp assembled on 2012-04-11
GenBank Submission: KX802964
> BS28319.complete
GAAGTTATCAGTCGACATGAGTAAGCTGGAAACGGATTCGGACAGTTCAG
AGGAGTTTTTCGATGCCGAGGACACTACGCCCAATCGCCATTCGACTTTG
TGTCGAAAGCTGCCGCCCGAGGTGGCCCAGGAGTTCATCTTTCCCGAGCC
CGCCGTGAGAGTGAATGCCGCCGCCTCATCCGACAGCGATGCTACGCCCA
TTGGCGCTGGAACGCCCGCCACCCGGAGTCCCACTAATAGCCTGGGTGCC
CGGCTAAAGCCGCAGGATGCAGGGGTCTTCGTTGAGCCCAAGCCCGTGAT
AGGACCTTTGGGTAGACAGCGCTTTCACGAACTACGTCAGTGCATGCAAA
ACGATGAAGATGATAATCCAGGAAATACACTCACACCTGATTCTCAGAAT
AGCTCAACGGATGGCATTTTTACCAACCGTTCGACGCATCCGTTTAAGGT
CATTGAGACAGATGCGATGAGCATACAGAGCATGACATCACTGGGTCGCG
TGGGCCGAATCTTGGCGGGCAGCATTGATCCATCTGCTATAAGCATAGAT
CGCGAGTCCCTGGCCTCGTTGAATGCGCAACAGCAGAAGCAGCAGGCGCA
GCAGCAACAACAGGCGCAGCCTACATCGTCTACCAGCTCCAATACTCCAC
CGAGCGTTGGAAACACCTCTTCCGGGATGAGCACGCCCAGGGTGTCGCCC
AAGCATCAGCAGAGTGGTAAGGAAGTAGCCGCCACCACGACAGGGATTCC
TAGTGCCGCATCCTCCGCGCAGAGCTCTGGTGTTGGCTCGATGGTTTTGC
AGGAACCAGATGTGATAGCAAGCACAAAGCTTGCCCAGTCTAAAACTACT
GATTCCATCACCTCGTCGGGACCCGTGGCGCCACCGCGAAGAAAGAAGAA
GTCTCGTAATTGCTCAATCAGTTCCTCAGATCAGTATAGTCTTCCTCCTG
CGGACAACGAAGACACTGATAGTGATACGCGGTCTGTGAAGAGTGTGCAG
GGTCTTCAGCAAAAGCTGCGGGATGACTTTGTCATGGAGTTCGAGAGCTC
TCTTAACAATGCAACTAGTTCAGCCTCCAATATCACCCTGACCTGCTCCT
CCACCAATACAGTTGTTTCTGCATCGGCTTCGACTTCGGCAGCATCTTCG
TCCTTGCCATCAACAATTGCAATTCATATGCGCCCCATGGTCGCTTCGGT
CACCATTGCTGGTCCAAAACTCACTCAATCTCTGGGCAGCAGTTCCACGT
CGGTCCACTCCAAGCCAAGTCCATCAAATTCAGCGAAAAGCAATTCCGCA
CCAGCGAGGGTTAGTTCCATTGATCCGAATCAGGGTCTGAATCTGTTTAA
GGCCATCCAGGGAGGTTATGTGGTGAAACCACGCGACGAGGCCAGCAACA
AGGCGCAAGGCCCATCCCAAGATGAAATCGAGCGCATTGAGAAAATGCTG
ATGGAAAGCGCGAACCGACCAAAGCTGGCGGGAACGGGATCCAACAGTTT
AGGAAGCTCTACACGCTATCCCGGATTTTATCGCGGTGTTAACGATAAGG
AGCGCCGGAAGTCCGCTGGCGACGAAGATGTGCTCAAACAGATGAACATT
TATGTGCGCACGCGAACCAGCTCAGGCAAGCAGCTAACCGACTTTGAGAT
CCTTGAACAAGTTCCTGTTAAAAATTTAGACACGGGAGAAAATATGCCTC
TATCCGAAATGCGTTCACCACCAGTGCCTGAGGGATGGAATCCGCTCTCG
CTACACATCCTTAAGCTGACCTCCCACCTGGAGGTGATCCAGAAGGAGTC
CGACGAGGAGAGTGTGATTGGCATACCGCCTAGCATCGAGGGTCAGCAGC
CCGACGAAGAAGAACTGGAAACGGAAGATGGCAGTCGACTGAAAAAGAAA
ACGGCCCGGATCAAGAGGTTCTTTGGCAGCACAATGCGAAAGACGGTGGA
CAAGGCCAAGTCGATTGCATCCGAAGTGTCGCATGCGCGACACAAAGAGG
ATGTGGCTGATATTGTTGATGCAATGAATCCCGAGCAAAATATCAAAATC
AAGGCTTCCTCGTCCAACAAGGGACCCTATGAGTTTACCAAACTGCAGCA
CGTCCAGGATTTGAGTGGCGAAGATACCAGTGCCGTGTGGTGCATGAAGT
TCAGTTCCTGCGGTCGACTCCTGGCCACTGCTGGACAGGACAAGGTGTTA
AGGATTTGGGTTCTTAAAGATGCCTATCCGTTTTTCCAGGACATGCGCAA
CAAATACAATGCTGACCAAAAATCCTCACCTACGCCCTCGCAAGAGTCAC
TCGTCTCGCAGCATTCGGCTGAGGAAGCCATTGCCATGGCTACTGCCGCA
GAGAAATGCACGGGCCCCTTCATGCCAAAGCCCTTCTGCACCTACAATGG
ACACACCTCCGATTTACTGGACGTCAGCTGGTCAAAGAATTACTTCATAC
TGTCAAGCAGCATGGACAAGACTGTGCGGCTCTGGCACATTTCCAGAAAG
GAGTGCCTTTGCTGTTTTCAGCATATCGATTTTGTCACCGCTATTGCGTT
CCATCCACGCGATGATCGCTACTTTTTGAGTGGCAGCCTCGATGGCAAAC
TAAGGTTGTGGAACATACCCGACAAAAAGGTGGCACTGTGGAATGAGGTA
GATGGCCAGACAAAGCTTATAACGGCTGCCAACTTCTGCCAAAATGGACA
GTTCGCCGTTGTAGGGAGCTACGATGGTCGCTGCATATTTTATAACACGG
ATCAGCTGAAATACCACACGCAGATTCATGTGCGCTCCACCAGGGGTAAA
AACCGCATTGGCCGCAAGATCAGTGGCATTGAACCGATGCCCGGCGAAGA
CAAGATTCTAGTCACATCCAACGACAGCAGAGTGCGCCTGTACGATTTGA
GGGACTTGAACTTGTCCTGCAAGTACAAGGGCTACTTGAATGTGTCCTCG
CAAATTAAGGGCTCGTTCAGCCACGATGGAAAGTACATCATAGCCGGGTC
CGAGAATCAGTGCATCTATATTTGGAAAACAAACCACGATTACTCAAAAC
TCAGTTCTGTTCGCCGCGATCGCAGCGACTTTTGGGAAGGCATTAAAGCA
CACAATGCTACGGTCACTTGTGCCATATTCGCGCCACACCCAGAGGCTAT
CATCAAGCCCGAACCGGATGAGATCTCCAATGAGAAGTTGGCTCACAATC
AGCCGGATCCACTGGTCGAGCAGCACAAAAAGGGATGTGGTTATGTGTTG
GTCAGCGCCGATTTCAATGGCGCCATCAAGGTGTTCATCAACAAGACGAA
GCCGAAGCACAGCAGTCTACCCTACACGGCCATTGCGGATTAGAAGCTTT
CTAGACCAT
BS28319.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:39:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34133-RC | 3327 | CG34133-PC | 1..3327 | 17..3343 | 16620 | 100 | Plus |
| CG34133-RB | 3237 | CG34133-PB | 292..3237 | 398..3343 | 14715 | 100 | Plus |
| CG34133-RE | 3273 | CG34133-PE | 1608..3273 | 1678..3343 | 8330 | 100 | Plus |
| CG34133-RB | 3237 | CG34133-PB | 1..291 | 17..307 | 1455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:39:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34133-RC | 4263 | CG34133-RC | 340..3670 | 13..3343 | 16625 | 99.9 | Plus |
| CG34133-RB | 3831 | CG34133-RB | 635..3580 | 398..3343 | 14715 | 100 | Plus |
| CG34133-RE | 4209 | CG34133-RE | 1951..3616 | 1678..3343 | 8330 | 100 | Plus |
| CG34133-RB | 3831 | CG34133-RB | 340..634 | 13..307 | 1460 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:39:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29873322..29874144 | 2238..3060 | 4115 | 100 | Plus |
| 3R | 32079331 | 3R | 29871445..29872223 | 536..1314 | 3880 | 99.9 | Plus |
| 3R | 32079331 | 3R | 29872540..29873265 | 1515..2240 | 3630 | 100 | Plus |
| 3R | 32079331 | 3R | 29869849..29870054 | 102..307 | 1030 | 100 | Plus |
| 3R | 32079331 | 3R | 29872281..29872488 | 1312..1519 | 1025 | 99.5 | Plus |
| 3R | 32079331 | 3R | 29874409..29874566 | 3186..3343 | 790 | 100 | Plus |
| 3R | 32079331 | 3R | 29871236..29871377 | 395..536 | 710 | 100 | Plus |
| 3R | 32079331 | 3R | 29874205..29874346 | 3059..3200 | 665 | 97.9 | Plus |
| 3R | 32079331 | 3R | 29871060..29871149 | 308..397 | 450 | 100 | Plus |
| 3R | 32079331 | 3R | 29869704..29869793 | 13..102 | 435 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:39:04 has no hits.
BS28319.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 12:37:32 Download gff for
BS28319.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34133-RC | 339..3665 | 17..3343 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:27 Download gff for
BS28319.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34133-RC | 344..3670 | 17..3343 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:33:49 Download gff for
BS28319.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34133-RC | 344..3670 | 17..3343 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:33:49 Download gff for
BS28319.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29869850..29870054 | 103..307 | 100 | -> | Plus |
| 3R | 29871060..29871149 | 308..397 | 100 | -> | Plus |
| 3R | 29871239..29871377 | 398..536 | 100 | -> | Plus |
| 3R | 29869708..29869793 | 17..102 | 100 | -> | Plus |
| 3R | 29871446..29872223 | 537..1314 | 99 | -> | Plus |
| 3R | 29872284..29872484 | 1315..1515 | 100 | -> | Plus |
| 3R | 29872541..29873264 | 1516..2239 | 100 | -> | Plus |
| 3R | 29873324..29874142 | 2240..3058 | 100 | -> | Plus |
| 3R | 29874205..29874333 | 3059..3187 | 100 | -> | Plus |
| 3R | 29874411..29874566 | 3188..3343 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:27 Download gff for
BS28319.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25695430..25695515 | 17..102 | 100 | -> | Plus |
| arm_3R | 25695572..25695776 | 103..307 | 100 | -> | Plus |
| arm_3R | 25696782..25696871 | 308..397 | 100 | -> | Plus |
| arm_3R | 25696961..25697099 | 398..536 | 100 | -> | Plus |
| arm_3R | 25697168..25697945 | 537..1314 | 99 | -> | Plus |
| arm_3R | 25698006..25698206 | 1315..1515 | 100 | -> | Plus |
| arm_3R | 25698263..25698986 | 1516..2239 | 100 | -> | Plus |
| arm_3R | 25699046..25699864 | 2240..3058 | 100 | -> | Plus |
| arm_3R | 25699927..25700055 | 3059..3187 | 100 | -> | Plus |
| arm_3R | 25700133..25700288 | 3188..3343 | 100 | | Plus |
BS28319.pep Sequence
Translation from 16 to 3342
> BS28319.pep
MSKLETDSDSSEEFFDAEDTTPNRHSTLCRKLPPEVAQEFIFPEPAVRVN
AAASSDSDATPIGAGTPATRSPTNSLGARLKPQDAGVFVEPKPVIGPLGR
QRFHELRQCMQNDEDDNPGNTLTPDSQNSSTDGIFTNRSTHPFKVIETDA
MSIQSMTSLGRVGRILAGSIDPSAISIDRESLASLNAQQQKQQAQQQQQA
QPTSSTSSNTPPSVGNTSSGMSTPRVSPKHQQSGKEVAATTTGIPSAASS
AQSSGVGSMVLQEPDVIASTKLAQSKTTDSITSSGPVAPPRRKKKSRNCS
ISSSDQYSLPPADNEDTDSDTRSVKSVQGLQQKLRDDFVMEFESSLNNAT
SSASNITLTCSSTNTVVSASASTSAASSSLPSTIAIHMRPMVASVTIAGP
KLTQSLGSSSTSVHSKPSPSNSAKSNSAPARVSSIDPNQGLNLFKAIQGG
YVVKPRDEASNKAQGPSQDEIERIEKMLMESANRPKLAGTGSNSLGSSTR
YPGFYRGVNDKERRKSAGDEDVLKQMNIYVRTRTSSGKQLTDFEILEQVP
VKNLDTGENMPLSEMRSPPVPEGWNPLSLHILKLTSHLEVIQKESDEESV
IGIPPSIEGQQPDEEELETEDGSRLKKKTARIKRFFGSTMRKTVDKAKSI
ASEVSHARHKEDVADIVDAMNPEQNIKIKASSSNKGPYEFTKLQHVQDLS
GEDTSAVWCMKFSSCGRLLATAGQDKVLRIWVLKDAYPFFQDMRNKYNAD
QKSSPTPSQESLVSQHSAEEAIAMATAAEKCTGPFMPKPFCTYNGHTSDL
LDVSWSKNYFILSSSMDKTVRLWHISRKECLCCFQHIDFVTAIAFHPRDD
RYFLSGSLDGKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGQFAVVG
SYDGRCIFYNTDQLKYHTQIHVRSTRGKNRIGRKISGIEPMPGEDKILVT
SNDSRVRLYDLRDLNLSCKYKGYLNVSSQIKGSFSHDGKYIIAGSENQCI
YIWKTNHDYSKLSSVRRDRSDFWEGIKAHNATVTCAIFAPHPEAIIKPEP
DEISNEKLAHNQPDPLVEQHKKGCGYVLVSADFNGAIKVFINKTKPKHSS
LPYTAIAD*
BS28319.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:18:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34133-PC | 1108 | CG34133-PC | 1..1108 | 1..1108 | 5719 | 100 | Plus |
| CG34133-PE | 1090 | CG34133-PE | 1..1090 | 1..1108 | 5600 | 98.4 | Plus |
| CG34133-PB | 1078 | CG34133-PB | 1..1078 | 1..1108 | 5511 | 97.3 | Plus |
| wds-PB | 361 | CG17437-PB | 40..338 | 672..1042 | 207 | 22.7 | Plus |
| wds-PA | 361 | CG17437-PA | 40..338 | 672..1042 | 207 | 22.7 | Plus |
