BS28321.complete Sequence
1100 bp assembled on 2012-03-08
GenBank Submission: KX804083
> BS28321.complete
GAAGTTATCAGTCGACATGCCCATCGACATGGATATACCAAAGGAAGCGG
AGTCGAACGACAAGTTCATAGTAAAGTATCGCCAGCAGTATTACGATTTG
TCCAGGTTTATGCACAAGCATCCGGGAGGCATAAACACACTCAAAGGTCT
CAACAGCGGGGACATGACAGCTCGCTTCCTAAAGGCGCCGCCACATTCGG
ATGCGGCCATGTACTTGATGAGGGAGTACAAAATCGATCCAGAGGACTCT
CGGAAACCAAAGTCGAGCCAAAGGGAAACGTTGCATCACGATGAAGATGG
GACTTTGCGACAACGGCCCAGGGAAACGGAGGACAAGAACAATAACCAGG
TGGACGATAGTATGGAGCACCTAGTGGACTGGTCTAAGGCAATGCTTCCG
CAGATAGCTAACATAACGGATTGCTACGATGAGTGGGTTCACAAGCCGGT
GGACAGGCCACTGCGTCTCTTTGACCCTTGGTACTTGGAGATGTGCACCA
AGACGCCCTGGTGGCTGGTGCCCCTGTTCTGGATACCAGTGATCGTGAAA
TGCGCCGTGGAGGAGTTCACCACCGCCTGGCAGGATAGCAACCAGCTGGC
TGTGTTCTCCGGTTACTTTTTATTTGGCGTGCTCCTGTGGTCTTTCCTGG
AGTACACACTGCACCGCTGGGTGTTCCACGTGAAGCTGAGCAACAAGAGC
GGAAGTTGGCTATGCACCTTCCACTTCATGATCCATGGCCTGCACCACAA
GGTGCCCTTCGATCCGATGCGACTGGTGTTTCCGCCCCTTCCCGGCGCAG
TGCTCGCCGCGGTCATCTACACCCCGCTCAGCTTTGTCCTGTCCCATCCG
CGAGTGATCTTGTCTGGAGCTCTGGCCGGCTATCTGTGCTACGATATGAT
GCACTACTACCTGCACTATGGGAACCCTTCGCTATGGGCCTTCGTACACA
TGAAGCGCTATCATCACCACCACCACTTCTCGCACCAAACTCTCGGTTAC
GGCATCAGCAGTCCCTTGTGGGATGTCGTCTTCAAAACGAGAATCCATCT
CCGCAAGCTGAGATACCAACTGCGCTGGTCCTAGAAGCTTTCTAGACCAT
BS28321.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:49:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fa2h-RB | 1068 | CG30502-PB | 1..1068 | 17..1084 | 5325 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:49:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fa2h-RB | 1399 | CG30502-RB | 120..1187 | 17..1084 | 5325 | 99.9 | Plus |
| CG11125-RC | 2177 | CG11125-RC | 1600..1950 | 367..17 | 1755 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:49:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7446401..7446892 | 1084..593 | 2445 | 99.8 | Minus |
| 2R | 25286936 | 2R | 7449418..7449768 | 367..17 | 1755 | 100 | Minus |
| 2R | 25286936 | 2R | 7446954..7447183 | 595..366 | 1150 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:49:40 has no hits.
BS28321.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:26 Download gff for
BS28321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30502-RB | 118..1185 | 17..1084 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:37 Download gff for
BS28321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fa2h-RB | 120..1187 | 17..1084 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:19:13 Download gff for
BS28321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fa2h-RB | 120..1187 | 17..1084 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:19:13 Download gff for
BS28321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7449418..7449768 | 17..367 | 100 | | Minus |
| 2R | 7446401..7446889 | 596..1084 | 99 | <- | Minus |
| 2R | 7446954..7447181 | 368..595 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:37 Download gff for
BS28321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3336923..3337273 | 17..367 | 100 | | Minus |
| arm_2R | 3333906..3334394 | 596..1084 | 99 | <- | Minus |
| arm_2R | 3334459..3334686 | 368..595 | 100 | <- | Minus |
BS28321.pep Sequence
Translation from 16 to 1083
> BS28321.pep
MPIDMDIPKEAESNDKFIVKYRQQYYDLSRFMHKHPGGINTLKGLNSGDM
TARFLKAPPHSDAAMYLMREYKIDPEDSRKPKSSQRETLHHDEDGTLRQR
PRETEDKNNNQVDDSMEHLVDWSKAMLPQIANITDCYDEWVHKPVDRPLR
LFDPWYLEMCTKTPWWLVPLFWIPVIVKCAVEEFTTAWQDSNQLAVFSGY
FLFGVLLWSFLEYTLHRWVFHVKLSNKSGSWLCTFHFMIHGLHHKVPFDP
MRLVFPPLPGAVLAAVIYTPLSFVLSHPRVILSGALAGYLCYDMMHYYLH
YGNPSLWAFVHMKRYHHHHHFSHQTLGYGISSPLWDVVFKTRIHLRKLRY
QLRWS*
BS28321.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:50:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fa2h-PB | 355 | CG30502-PB | 1..355 | 1..355 | 1982 | 100 | Plus |
