BS28323.complete Sequence
1247 bp assembled on 2012-03-08
GenBank Submission: KX805265
> BS28323.complete
GAAGTTATCAGTCGACATGGCGGACATTTACCAGGATGCCAGCACCACGC
TGCGCTCCGTGTTTCCCAACTCGCGGCTGGACTCGCTGGCCGGAGTGGAT
CGCCGGATGGAGAGTCAGCTGCCAGGACCACCGGATGCGGATGCAGTCAC
CACCGCCTCGAGCATTGGCTATAATCCGCTCAACGACGACGACTGGTGGG
CCAATGCCATCGAAGTGGACACCTTCGACTCACCGCTGGCCTTCGATGCT
AGCGAAAATGGTCTGTGGAACGGACACTTTGTGCCGCCGCCACCTCGCCC
GCCCTTCCTGGATGAAAGCGTCGCCGCCGACGGCCTGACCACCTGTGATC
TGTGCACGTGGGCATGGCAGCGGAATGCCTACTCCCTGGATGGTTCCATA
GAAACCGCCGGCGAACTTGGATGGGCATTCACCCTAATCATAGTTTCAAT
CATATCGGCTCTAATAGGTGCTATTGTAATGGTCATAGTTCTAAGATGTA
GAAGAATTAAATCAGCGAATGCCAATGGTGGCCGCCCGCAGCCTTGGTGG
TGTCGCAATAACCGAAACGGTGGCCAAAATCGATCGCCCATCTCGATCAA
GCACTCGGCGGACAGCATCCGGCGGCCCACGAGCAACTCCGGCGTTTGGA
CCTGGCTGGGCGGCAGTCGTCGCTCCTCCGCCGGTCCCGACCAGATCGGT
CCGCCGTCGACGTCGCCGGCGGAGAACCACTATACCCACATGGACGATGC
CTACAGTCCGGTGGGCGTGAGCGAGGCGCTCTACGCGGAACTGGATCGCG
AGTCCGTGCGATCCGCCAATCCCTCATATCAGAATACGGCCTACAGTCAG
TGTGGCGAGAAATACAATTACCAGGGCCACGAGCAGGACATTCCCATGGT
GGTCTCCTCGGCACCCAGCAGTGCTTACTATTCGGATCTGTCGGTGACCG
CGATGCCCGGCGGAGCGAGTGGCAGTAATCAGGGCGCCTACGAGATTGTC
GGACTGAACGTGATGTCCCAGCCGCTGCCCAACTGGGATCATCATGGCGG
AGGAGTGGGAGGTGGCGGTGTTGTGGCTGCAGGAGCAGCAGCCGCCATCC
TTGGAGGCGGTGGTGGTGGGGGCAATGGCCTTACGCCGGGCGAGGCTGCG
GCGATGACGCAACGACGAGGTCCTCGACTGGCGGCCATCAACGAGACGAG
CACCAGCACAGTGCCCTCGGACTATGTCTAAAAGCTTTCTAGACCAT
BS28323.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:44:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42747-RC | 1215 | CG42747-PC | 1..1215 | 17..1231 | 6075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:44:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42747-RC | 2857 | CG42747-RC | 735..1950 | 17..1232 | 6080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:43:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6461666..6462050 | 17..401 | 1925 | 100 | Plus |
| 3L | 28110227 | 3L | 6484683..6485057 | 858..1232 | 1875 | 100 | Plus |
| 3L | 28110227 | 3L | 6484230..6484562 | 527..859 | 1665 | 100 | Plus |
| 3L | 28110227 | 3L | 6476541..6476645 | 400..504 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:44:00 has no hits.
BS28323.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:22 Download gff for
BS28323.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42747-RC | 733..1945 | 17..1229 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:07 Download gff for
BS28323.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42747-RC | 735..1947 | 17..1229 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:17:09 Download gff for
BS28323.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42747-RC | 735..1947 | 17..1229 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:17:09 Download gff for
BS28323.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6476543..6476645 | 402..504 | 100 | -> | Plus |
| 3L | 6480295..6480317 | 505..527 | 100 | -> | Plus |
| 3L | 6461666..6462050 | 17..401 | 100 | -> | Plus |
| 3L | 6484231..6484562 | 528..859 | 100 | -> | Plus |
| 3L | 6484685..6485054 | 860..1229 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:07 Download gff for
BS28323.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6454766..6455150 | 17..401 | 100 | -> | Plus |
| arm_3L | 6469643..6469745 | 402..504 | 100 | -> | Plus |
| arm_3L | 6473395..6473417 | 505..527 | 100 | -> | Plus |
| arm_3L | 6477331..6477662 | 528..859 | 100 | -> | Plus |
| arm_3L | 6477785..6478154 | 860..1229 | 100 | | Plus |
BS28323.pep Sequence
Translation from 16 to 1230
> BS28323.pep
MADIYQDASTTLRSVFPNSRLDSLAGVDRRMESQLPGPPDADAVTTASSI
GYNPLNDDDWWANAIEVDTFDSPLAFDASENGLWNGHFVPPPPRPPFLDE
SVAADGLTTCDLCTWAWQRNAYSLDGSIETAGELGWAFTLIIVSIISALI
GAIVMVIVLRCRRIKSANANGGRPQPWWCRNNRNGGQNRSPISIKHSADS
IRRPTSNSGVWTWLGGSRRSSAGPDQIGPPSTSPAENHYTHMDDAYSPVG
VSEALYAELDRESVRSANPSYQNTAYSQCGEKYNYQGHEQDIPMVVSSAP
SSAYYSDLSVTAMPGGASGSNQGAYEIVGLNVMSQPLPNWDHHGGGVGGG
GVVAAGAAAAILGGGGGGGNGLTPGEAAAMTQRRGPRLAAINETSTSTVP
SDYV*
BS28323.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:50:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42747-PC | 404 | CG42747-PC | 1..404 | 1..404 | 2158 | 100 | Plus |
| CG13300-PA | 388 | CG13300-PA | 53..370 | 33..320 | 420 | 33.8 | Plus |
