Clone BS28324 Report

Search the DGRC for BS28324

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:283
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG43105-RA
Protein status:BS28324.pep: full length peptide match
Sequenced Size:266

Clone Sequence Records

BS28324.complete Sequence

266 bp assembled on 2012-03-08

GenBank Submission: KX805839

> BS28324.complete
GAAGTTATCAGTCGACATGTGTCATCCAAGTCTACTGATGTGGCGTATTT
ATTCCCTTAAGCCCACATCCAAATTCTTGGAGTTCAGGATCAAGAGGAGA
TACGGCCTGACTCGTTGGCATCCGCAGTTTGATTTGGAGAGCTGTCCCCT
TTGCCCCAGTCGCCCAATGTCGAGAAATTCTCCTCAGACAAGGCTATTCT
ATCTAACGCTTGTAGGCCAGGTTGAAGGCGAACAAACAAGTAAGTTCTAA
AAGCTTTCTAGACCAT

BS28324.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:45:28
Subject Length Description Subject Range Query Range Score Percent Strand
dup-RB 2232 CG8171-PB 1483..1554 139..210 225 87.5 Plus
dup-RA 2232 CG8171-PA 1483..1554 139..210 225 87.5 Plus
dup-RB 2232 CG8171-PB 1435..1475 107..147 175 95.1 Plus
dup-RA 2232 CG8171-PA 1435..1475 107..147 175 95.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
dup-RB 2764 CG8171-RB 1698..1769 139..210 225 87.5 Plus
dup-RA 3138 CG8171-RA 2072..2143 139..210 225 87.5 Plus
dup-RB 2764 CG8171-RB 1650..1690 107..147 175 95.1 Plus
dup-RA 3138 CG8171-RA 2024..2064 107..147 175 95.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:45:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15374995..15375228 250..17 1170 100 Minus
2R 25286936 2R 15374065..15374231 212..48 635 93.4 Minus
2R 25286936 2R 15375920..15375973 70..17 255 98.1 Minus
2R 25286936 2R 15377614..15377685 210..139 225 87.5 Minus
Blast to na_te.dros performed on 2014-11-28 05:45:27 has no hits.

BS28324.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:23 Download gff for BS28324.complete
Subject Subject Range Query Range Percent Splice Strand
CG43105-RA 417..648 17..248 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-04 22:32:13 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 06:17:40 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:17:40 Download gff for BS28324.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15374997..15375228 17..248 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:13 Download gff for BS28324.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11262502..11262733 17..248 100   Minus

BS28324.pep Sequence

Translation from 16 to 249

> BS28324.pep
MCHPSLLMWRIYSLKPTSKFLEFRIKRRYGLTRWHPQFDLESCPLCPSRP
MSRNSPQTRLFYLTLVGQVEGEQTSKF*
Sequence BS28324.pep has no blast hits.