BS28328.complete Sequence
1307 bp assembled on 2012-03-08
GenBank Submission: KX800377
> BS28328.complete
GAAGTTATCAGTCGACATGGCAGACACTGCCAAAGACAAGGACGTCATCG
ACCAGGAGGACGTGGAGGTGGAGGAGCAGGAGGAGACCACCACCACCACC
ACGACGACCAAGAAAACCTCCCAGTGGCACAAGACTCGCACCACCAAGAC
TTCTGCCACCACAAAGACAACCACGCTCACCACCCCCGCCAAACTGTATG
GCAAGGATCTGAGTGAGTACGATGATGTGGATGTGGAGAGCCTGCTGGCC
CAGCTCTCCCCCGAGGAGATAACCATACTGGCCAAAGAAGTGGATCCCGA
TGACAACTTCCTGCCGCCAGACCAGCGCAATAGCTATGAGTGCACCAAGG
AAGCCACCGGGCCTCTCAATCGCAAGCAGCTGATCGAGCACATCAATAAG
CAGGCCATCGAGACCCCGGATCAGCCGGAGTTCGAGCCGTTCGTTCAGGG
CAAGGTTCGTGGAAAGAAGTGGGTCCCACCGCCAAGGGATGCCCGCGACA
TCGAGGCCGAAGAACAAATCGCCATTGACATGGGCGAGGAGTACGAACAC
GCCCTTAACGATGCCACGCAGGAGGAGATCATCGATCTGGCCGCCATCCT
CGGCTTCCACTCGATGATGAATCAGGACCAGTACCACGCCTCCTTGCTCA
ACAAGGGTCAGCCCGTGGGCCTGGGATGGGATGGCATTACGAAATCCACT
CAGCAGAAGCTCTTCCCTATGGATCCGCCCAACAACACAGATGTGGAGGA
ATCCATCAAGCGGGTCAAGGACGATGACTCCAAGCTGATTGACCTCAACT
TGAACAACATTAAGAACATCTCGGACGAGAAACTCGAGCAACTGTTTGCC
GCACTGCCTCAGAACGAACATTTGGAAGTCCTCTCGCTAACAAATGTGGG
CCTCACCGACAAGACAGCCCTCCTGTTAGCCGCGGCCATAGAGAAGAGCA
AAACCCTGAGAGTATTAAATGTCGAGACCAACTTTATCAGTCCGCCCGTG
ATTGTTAAGTTGGTGCAAGCCCTGCTCAAGTGCCACACCATCGAGGAGTT
TAGGGCCTCCAATCAGCGGTCTGCGGTTCTGGGCAACAAGATCGAGATGG
AAATCACCGACCTGGTGGAGAAGAACTCGTCGCTGCTGCGCCTTGGCTTG
CACCTGGAGTTCAACGACGCCCGCCACCGAGTGGCCGCTCACCTGCAGCG
CAACATCGACAGAATAAGAAAAGATCTTGAGTTGCGACTGCAGTTCAGAT
TTTTCAATAATCTGCATAGAAAGTCGACAAGAATTCAATAAAAGCTTTCT
AGACCAT
BS28328.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:36:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tmod-RO | 1275 | CG1539-PO | 1..1275 | 17..1291 | 6375 | 100 | Plus |
| tmod-RK | 1275 | CG1539-PK | 1..1275 | 17..1291 | 6375 | 100 | Plus |
| tmod-RJ | 1230 | CG1539-PJ | 1..1200 | 17..1216 | 6000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:36:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tmod-RO | 3484 | CG1539-RO | 379..1654 | 16..1291 | 6380 | 100 | Plus |
| tmod-RK | 3232 | CG1539-RK | 348..1623 | 16..1291 | 6380 | 100 | Plus |
| tmod-RJ | 2753 | CG1539-RJ | 386..1586 | 16..1216 | 6005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:36:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30572023..30572535 | 302..814 | 2565 | 100 | Plus |
| 3R | 32079331 | 3R | 30572597..30572850 | 813..1066 | 1270 | 100 | Plus |
| 3R | 32079331 | 3R | 30571807..30571962 | 147..302 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 30572922..30573072 | 1064..1214 | 755 | 100 | Plus |
| 3R | 32079331 | 3R | 30548617..30548749 | 16..148 | 665 | 100 | Plus |
| 3R | 32079331 | 3R | 30575432..30575508 | 1215..1291 | 385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:36:03 has no hits.
BS28328.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:27 Download gff for
BS28328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RK | 349..1621 | 17..1289 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:46 Download gff for
BS28328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RK | 349..1621 | 17..1289 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:59:55 Download gff for
BS28328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RK | 349..1621 | 17..1289 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 08:59:55 Download gff for
BS28328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30572925..30573072 | 1067..1214 | 100 | -> | Plus |
| 3R | 30572599..30572850 | 815..1066 | 100 | -> | Plus |
| 3R | 30575432..30575506 | 1215..1289 | 100 | | Plus |
| 3R | 30548618..30548749 | 17..148 | 100 | -> | Plus |
| 3R | 30571809..30571961 | 149..301 | 100 | -> | Plus |
| 3R | 30572023..30572535 | 302..814 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:46 Download gff for
BS28328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26374340..26374471 | 17..148 | 100 | -> | Plus |
| arm_3R | 26397531..26397683 | 149..301 | 100 | -> | Plus |
| arm_3R | 26397745..26398257 | 302..814 | 100 | -> | Plus |
| arm_3R | 26398321..26398572 | 815..1066 | 100 | -> | Plus |
| arm_3R | 26398647..26398794 | 1067..1214 | 100 | -> | Plus |
| arm_3R | 26401154..26401228 | 1215..1289 | 100 | | Plus |
BS28328.pep Sequence
Translation from 16 to 1290
> BS28328.pep
MADTAKDKDVIDQEDVEVEEQEETTTTTTTTKKTSQWHKTRTTKTSATTK
TTTLTTPAKLYGKDLSEYDDVDVESLLAQLSPEEITILAKEVDPDDNFLP
PDQRNSYECTKEATGPLNRKQLIEHINKQAIETPDQPEFEPFVQGKVRGK
KWVPPPRDARDIEAEEQIAIDMGEEYEHALNDATQEEIIDLAAILGFHSM
MNQDQYHASLLNKGQPVGLGWDGITKSTQQKLFPMDPPNNTDVEESIKRV
KDDDSKLIDLNLNNIKNISDEKLEQLFAALPQNEHLEVLSLTNVGLTDKT
ALLLAAAIEKSKTLRVLNVETNFISPPVIVKLVQALLKCHTIEEFRASNQ
RSAVLGNKIEMEITDLVEKNSSLLRLGLHLEFNDARHRVAAHLQRNIDRI
RKDLELRLQFRFFNNLHRKSTRIQ*
BS28328.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:50:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tmod-PO | 424 | CG1539-PO | 1..424 | 1..424 | 2166 | 100 | Plus |
| tmod-PK | 424 | CG1539-PK | 1..424 | 1..424 | 2166 | 100 | Plus |
| tmod-PJ | 409 | CG1539-PJ | 1..401 | 1..401 | 2048 | 100 | Plus |
| tmod-PC | 409 | CG1539-PC | 1..401 | 1..401 | 2048 | 100 | Plus |
| tmod-PQ | 454 | CG1539-PQ | 41..454 | 7..424 | 1967 | 93.5 | Plus |
