BS28330.complete Sequence
1823 bp assembled on 2012-04-11
GenBank Submission: KX800587
> BS28330.complete
GAAGTTATCAGTCGACATGGTCACGATCACCTCACCTCTGTGGCCGGCCG
ATCTCCTCGAAAAGTGCGCCCAAGGACGTGCCGCCTGGTTGGAGCGGGGT
CGACGCTGCAGCGTCCAGGATCAGCAACAGCAGCAGGCCACCTGCCACCG
ACGCTGGGTGAAGCGCAACCGAATCCAAGACGCCTCTTTGGGCGGCTCAT
CGGACGATGAGGATTTCCTGGGCGTTCTGCGGGGTCCTAGCACCTTTGCG
AATGCCTTTCTCTACGTGGGCCTGGGCACGGTGGCACTGGGACTCGTCAT
CGCGTTCGTTGGCACCGGCGAGAAGGGCTTCAAAACCACGGAACTAAGAC
TTATAGGCCCCTCTCTCATAGGATTGGGCCTGATCTGTTGCATTTTACGC
ATCCTCTTCTGCATCTGTCCATCGCACTGCATTTCATCTAGCAAAAAGAC
GCGGAAGAAAAACGGCAACAAGATTGATGCAGATCACACGACATCGTTGC
TCAGAAACGAGAGCAAAAGAGTATCTATAGCGAGAGGTCCTAGTTTTCAG
CCCAAATATCCCATAGCGCACAAACGCAGCCAGAGCAAAATGCTCAACGA
GGGAATGGAGGCACTGCGTCAGATAGCCACCACATCCTTGTTCATGCAGA
ACGAGCAGAAGACGGCCATCAATCGCGTGGTGCCGATCATCAATGAGCCG
GAAAGCGGTGATGCTCCACTGGAGATGAAGAAGCTGCAGACGGCTCTGAA
TGCCTGCGAGATGAGTGACGATGAGCAGGATCAGGACCAGGATCAGCAGA
AGCAGCAGCAGCAGCAGCAGCAGCAGATTGCCAAACGTACAACAGCCACA
ACTGCCGTTACGAGTAGTACCACCAAAGACCCAACATCAACAGCAGCCAC
ATCGAGGATAACGAGAGCCACTACCCTGAGCACGGTTGACGAAAAGCCGG
ACAGCAAGCTGGTGCGTCAGCGGGTGGCACTGCAGCAGCAACGCCAACAG
CAACAGCAGCAGCAGCAGCAGGATCAGCAACATGTACCGAAGTCGCAGTC
ATTGTCCTCCTCCTCCACGGTCAAAGATTCGCTGGAGGTGGTGGAGGAGA
CATCCCTGATAGATGCCAGCAACGAGACCACAACACCTGTTGCAACAACA
GCCGCTTCATCAAGTGCTCCCATGCCCAGCAGTTGCAGTACGGGTGCGAT
ACCTCGGCTTAATAGGCCGGGCATCTCGACGGGAGCCACGCCCAAAACGA
CGACCACGACGACGACGCCCACCATTACGGCACGGCTGCCCACGTCGCAG
TCGCATCCGACGAGCTATGACCTGCCACCGGCCCTGCCGCACACCTATTC
CGCAACGGCGACGGTACGCGGACCACTGGGCATGTCCATGAGCAGCTCCA
CTTCCGGCAAGGGAATGGGAACTGCCTTCACATTGCCGCCCACCACGACA
GCGATTAGTCTGCTGCCGCTGCCGGCGCCTTCGACGGTGGCCACCGCCTC
ATCCACCAGCACAACGATAGCCAGTATTCCCGGCCAGGTGCTGGACACAA
GCGGAGTAACGAGTCTGAGTCTGAGCCTAATGCGACCGGCCACCGCATCC
GGTGTGGTACTGAGCGGATTGACCACCTCATCGTTCACCACCGGCACGGA
TCATCAAAAATCACATCCGTCATCCGCCGGTTCGGTGATGGGGCGTGGCA
GTAGCCTACTCCTTTCGCCTCCCACAGCGGCAGCGGCGTCGTCGTCCTCG
TCGTCGAGCAAATTCGAGCCAGAATTGGTGCTCAGTCCGGCTAACCTTGG
CCAGTAGAAGCTTTCTAGACCAT
BS28330.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:39:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42784-RC | 1791 | CG42784-PC | 1..1791 | 17..1807 | 8955 | 100 | Plus |
| CG42784-RF | 2955 | CG42784-PF | 1211..2955 | 63..1807 | 8725 | 100 | Plus |
| CG42784-RI | 1887 | CG42784-PI | 144..1887 | 64..1807 | 8720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:39:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42784-RC | 3621 | CG42784-RC | 459..2251 | 17..1809 | 8965 | 100 | Plus |
| CG42784-RF | 6640 | CG42784-RF | 3524..5270 | 63..1809 | 8735 | 100 | Plus |
| CG42784-RI | 5345 | CG42784-RI | 2230..3975 | 64..1809 | 8730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:39:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13497958..13499057 | 710..1809 | 5500 | 100 | Plus |
| 2L | 23513712 | 2L | 13497239..13497438 | 173..372 | 1000 | 100 | Plus |
| 2L | 23513712 | 2L | 13497500..13497680 | 370..550 | 905 | 100 | Plus |
| 2L | 23513712 | 2L | 13497739..13497900 | 549..710 | 810 | 100 | Plus |
| 2L | 23513712 | 2L | 13496543..13496698 | 17..172 | 780 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:39:57 has no hits.
BS28330.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 12:37:35 Download gff for
BS28330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42784-RC | 459..2249 | 17..1807 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:34 Download gff for
BS28330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42784-RC | 459..2249 | 17..1807 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:34:09 Download gff for
BS28330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42784-RC | 459..2249 | 17..1807 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:34:09 Download gff for
BS28330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13497502..13497680 | 372..550 | 100 | -> | Plus |
| 2L | 13497741..13497900 | 551..710 | 100 | -> | Plus |
| 2L | 13496543..13496698 | 17..172 | 100 | -> | Plus |
| 2L | 13497239..13497437 | 173..371 | 100 | -> | Plus |
| 2L | 13497959..13499055 | 711..1807 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:34 Download gff for
BS28330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13496543..13496698 | 17..172 | 100 | -> | Plus |
| arm_2L | 13497239..13497437 | 173..371 | 100 | -> | Plus |
| arm_2L | 13497502..13497680 | 372..550 | 100 | -> | Plus |
| arm_2L | 13497741..13497900 | 551..710 | 100 | -> | Plus |
| arm_2L | 13497959..13499055 | 711..1807 | 100 | | Plus |
BS28330.pep Sequence
Translation from 16 to 1806
> BS28330.pep
MVTITSPLWPADLLEKCAQGRAAWLERGRRCSVQDQQQQQATCHRRWVKR
NRIQDASLGGSSDDEDFLGVLRGPSTFANAFLYVGLGTVALGLVIAFVGT
GEKGFKTTELRLIGPSLIGLGLICCILRILFCICPSHCISSSKKTRKKNG
NKIDADHTTSLLRNESKRVSIARGPSFQPKYPIAHKRSQSKMLNEGMEAL
RQIATTSLFMQNEQKTAINRVVPIINEPESGDAPLEMKKLQTALNACEMS
DDEQDQDQDQQKQQQQQQQQIAKRTTATTAVTSSTTKDPTSTAATSRITR
ATTLSTVDEKPDSKLVRQRVALQQQRQQQQQQQQQDQQHVPKSQSLSSSS
TVKDSLEVVEETSLIDASNETTTPVATTAASSSAPMPSSCSTGAIPRLNR
PGISTGATPKTTTTTTTPTITARLPTSQSHPTSYDLPPALPHTYSATATV
RGPLGMSMSSSTSGKGMGTAFTLPPTTTAISLLPLPAPSTVATASSTSTT
IASIPGQVLDTSGVTSLSLSLMRPATASGVVLSGLTTSSFTTGTDHQKSH
PSSAGSVMGRGSSLLLSPPTAAAASSSSSSSKFEPELVLSPANLGQ*
BS28330.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:19:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42784-PC | 596 | CG42784-PC | 1..596 | 1..596 | 2996 | 100 | Plus |
| CG42784-PF | 984 | CG42784-PF | 404..984 | 16..596 | 2913 | 99.8 | Plus |
| CG42784-PI | 628 | CG42784-PI | 49..628 | 17..596 | 2912 | 100 | Plus |
| CG46026-PA | 666 | CG46026-PA | 278..663 | 204..579 | 228 | 22.4 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 401..679 | 275..553 | 208 | 22.2 | Plus |
| CG46026-PA | 666 | CG46026-PA | 191..499 | 276..585 | 199 | 23.9 | Plus |
| CG46026-PA | 666 | CG46026-PA | 267..557 | 271..585 | 198 | 23.4 | Plus |
| CG46026-PA | 666 | CG46026-PA | 116..397 | 273..585 | 187 | 22.6 | Plus |
| CG46026-PA | 666 | CG46026-PA | 204..512 | 276..581 | 185 | 22.4 | Plus |
| CG46026-PA | 666 | CG46026-PA | 284..625 | 271..585 | 180 | 21.9 | Plus |
