BS28331.complete Sequence
1364 bp assembled on 2012-03-08
GenBank Submission: KX804623
> BS28331.complete
GAAGTTATCAGTCGACATGTTGCGTACTCTGTCACGCGTTAGCGAATTGC
CCATTATTGTTAAGCAACTGCAAAAACGTTGCCATAACAACAACAACAAC
AACATCATCATCAGCGGATGTCGGATACTTAGCAACAACAACAACAACAG
CAGCATCGATATCATCAGGAATGGGAGATATTCATCGTCGTTTTTCGGTT
TATTCCAGAATGCAGCCCAAGCAGGTGTTTCGAAAACCAACAATTATGCC
ACGGAGGCCACCGTTCAAGTGAATCGGCCCTTCAAGCTGCACCGCCTGGA
CGAAGGACCCGCCACGGAAGTGAAGCTGACCAAGGATCAGGCCCTCAAGT
ACTACACACAGATGCAGACGATCCGTCGGTTGGAGACGGCCGCCGGTAAT
CTGTACAAGGAGAAGATCATTCGCGGCTTCTGTCATCTGTATTCCGGCCA
GGAGGCATGCGCCGTTGGCATGAAGGCGGCGATGCGGGATGTGGACAACA
TCATCTCGGCGTACCGTGTCCACGGATGGACCTACCTGATGGGCGTCTCA
CCCAGCGGCGTACTGGCTGAGCTCACCGGTGTCCAGGGTGGCTGTGCCCG
CGGCAAGGGTGGCTCCATGCACATGTACGCACCGAACTTCTACGGAGGCA
ATGGCATCGTGGGTGCTCAAGTTCCTTTGGGTGCCGGCGTTGGCTTGGCC
TGCAAGTACAAGGGCAATGGCGGCATGTGCCTGGCCCTCTACGGTGATGG
TGCCGCCAATCAAGGACAGGTGTTCGAGGCTTACAACATGGCCTACCTGT
GGAAACTGCCTGTGATCTTTGTCTGCGAGAACAACAACTACGGAATGGGC
ACCAGTTCTGAGCGTGCTTCCTGCAACACTGATTACTATACCCGCGGCGA
CGCTCTGCCCGGAATCTGGGTGGACGGCATGGATGTGCTGGCCGTGCGCA
GCGCCACCGAGTTCGCCATCAACTATGTGAACACTCACGGACCTTTGGTG
ATGGAGACGAACACGTACCGATACTCTGGACACTCCATGTCCGATCCGGG
CACATCGTACCGCACACGCGAGGAGATCCAGGAGGTGCGCCAGAAGCGTG
ATCCCATCACCTCCTTCAAGGAGCTGTGCATCGAGCTGGGTCTGATTACC
ACCGATGAAGTTAAGGCCATCGATCTGAAGGTACGCAAGGAGGTCGACGA
GGCCACCGCCTTCGCCAAGTCCGATGCCGAGCTGGGCGTGAGCCACCTCT
GGACGGACGTGTACTCCAACAATCTGGAGCCCAAGCTGCGCGGCACCATC
GCCTACGATATTGATCACATCCAGGAGCGCAAGGGCGTCAATCACTAAAA
GCTTTCTAGACCAT
BS28331.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:36:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0334-RC | 1332 | CG7010-PC | 1..1332 | 17..1348 | 6660 | 100 | Plus |
| l(1)G0334-RD | 1200 | CG7010-PD | 61..1200 | 209..1348 | 5700 | 100 | Plus |
| l(1)G0334-RA | 1200 | CG7010-PA | 61..1200 | 209..1348 | 5700 | 100 | Plus |
| l(1)G0334-RD | 1200 | CG7010-PD | 1..60 | 17..76 | 300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:36:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0334-RC | 2034 | CG7010-RC | 208..1539 | 17..1348 | 6660 | 100 | Plus |
| l(1)G0334-RB | 1992 | CG7010-RB | 363..1639 | 72..1348 | 6370 | 99.9 | Plus |
| l(1)G0334-RD | 1667 | CG7010-RD | 175..1314 | 209..1348 | 5700 | 100 | Plus |
| l(1)G0334-RB | 1992 | CG7010-RB | 208..267 | 17..76 | 300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:36:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4703554..4704120 | 277..843 | 2835 | 100 | Plus |
| X | 23542271 | X | 4704194..4704518 | 842..1166 | 1625 | 100 | Plus |
| X | 23542271 | X | 4702687..4702892 | 72..277 | 1015 | 99.5 | Plus |
| X | 23542271 | X | 4704586..4704770 | 1164..1348 | 925 | 100 | Plus |
| X | 23542271 | X | 4702532..4702591 | 17..76 | 300 | 100 | Plus |
| X | 23542271 | X | 4706459..4706790 | 732..1063 | 265 | 72 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:36:56 has no hits.
BS28331.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:28 Download gff for
BS28331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0334-RC | 175..1499 | 22..1346 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:51 Download gff for
BS28331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0334-RC | 213..1537 | 22..1346 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:00:15 Download gff for
BS28331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0334-RC | 213..1537 | 22..1346 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:00:15 Download gff for
BS28331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4702537..4702591 | 22..76 | 100 | -> | Plus |
| X | 4702692..4702892 | 77..277 | 100 | -> | Plus |
| X | 4703555..4704119 | 278..842 | 100 | -> | Plus |
| X | 4704195..4704517 | 843..1165 | 100 | -> | Plus |
| X | 4704588..4704768 | 1166..1346 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:51 Download gff for
BS28331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4596570..4596624 | 22..76 | 100 | -> | Plus |
| arm_X | 4596725..4596925 | 77..277 | 100 | -> | Plus |
| arm_X | 4597588..4598152 | 278..842 | 100 | -> | Plus |
| arm_X | 4598228..4598550 | 843..1165 | 100 | -> | Plus |
| arm_X | 4598621..4598801 | 1166..1346 | 100 | | Plus |
BS28331.pep Sequence
Translation from 16 to 1347
> BS28331.pep
MLRTLSRVSELPIIVKQLQKRCHNNNNNNIIISGCRILSNNNNNSSIDII
RNGRYSSSFFGLFQNAAQAGVSKTNNYATEATVQVNRPFKLHRLDEGPAT
EVKLTKDQALKYYTQMQTIRRLETAAGNLYKEKIIRGFCHLYSGQEACAV
GMKAAMRDVDNIISAYRVHGWTYLMGVSPSGVLAELTGVQGGCARGKGGS
MHMYAPNFYGGNGIVGAQVPLGAGVGLACKYKGNGGMCLALYGDGAANQG
QVFEAYNMAYLWKLPVIFVCENNNYGMGTSSERASCNTDYYTRGDALPGI
WVDGMDVLAVRSATEFAINYVNTHGPLVMETNTYRYSGHSMSDPGTSYRT
REEIQEVRQKRDPITSFKELCIELGLITTDEVKAIDLKVRKEVDEATAFA
KSDAELGVSHLWTDVYSNNLEPKLRGTIAYDIDHIQERKGVNH*
BS28331.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:50:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0334-PC | 443 | CG7010-PC | 1..443 | 1..443 | 2333 | 100 | Plus |
| l(1)G0334-PD | 399 | CG7010-PD | 1..399 | 1..443 | 2042 | 90.1 | Plus |
| l(1)G0334-PA | 399 | CG7010-PA | 1..399 | 1..443 | 2042 | 90.1 | Plus |
| l(1)G0334-PB | 328 | CG7010-PB | 1..328 | 116..443 | 1744 | 100 | Plus |
| CG7024-PA | 479 | CG7024-PA | 43..390 | 89..436 | 1142 | 59.8 | Plus |
