BS28333.complete Sequence
1763 bp assembled on 2012-04-11
GenBank Submission: KX802236
> BS28333.complete
GAAGTTATCAGTCGACATGGATAAAGTGCACACGAGACATGGCAACATCG
AGACCCTTCCCCGATTCGTTCGCAACTTGCGAAACCTCCGCTGTTGCGAT
GGGGATGCGATATCGCTGGAATGTCACGTTGAGGCCGATCCGGAGCCGTT
CATCATCTGGGAAAAGGATGGGCATGTTATGCCCAGCGATCGGGACTACG
TGATGTCTTTCGATGGAACCAAGGCAACGCTGAGCATACCGCGCGTATAT
CCAGAGGATGAGGGCGAGTACACGTGCGTGGCCAAGAACTCGGTGGGTCG
CAGTCTCTCTTCCGCCTGCATTATAGTGGATGTGCCCGAGGAGAAGGAGA
ATATGCTCAGCCGCCAGCTAGCGCGTCCCAGTGGCCTGCTCTCCGCCCAC
TCCACGCCCCGTTCTACGCCGAGATCCACGCCCGCCAGAAGTTTCTCTCC
CCTGCGCCTATCGTACCGCACCAGCAGCATCGATCTGTCCGGCGTGGCGG
AACGCAGGCGTAGTGATGCCCGGAATGCCATCACGGCGCCAAAGTTTCTC
GCCATTCCCTACAATCGCGTCGTCGAGGAGGGCGACAGTGTGCGCTTCCA
GTGCGCCATCTCCGGACATCCCACACCGTGGGCGACATGGGACAAGGATG
GCCTGATTGTGACACCCACGCCGCGCATTGCCGTCAAGGAAATCGATGAC
CTTCGCATCATAGAGATCGATGAGGTGACCTTCGACGATGCCGGCCTGTA
TCGCGTCACGCTGGAGAACGATTTCGGTCGTATTGAGGCCACCGCTCGCT
TGGACGTCATCCGCAGCTCCCGCTACTCCAAGTCGCCTTCGGTGCGCAGC
GTGCGTGCCTCCTCCTCCCGCCGTAATGCCCACTTGTACAGGCGCATCAT
GGGTCCATCCACAGCAATTGGCGGACGCATGGCTCTGGCAAGTGGCTATC
GGGGTTCGTCGGTGCCCTCGGTGAGATTCTATCACAACGACGTGGAGCTC
GAGGCCTCGGAACGAGTTCACATCCTGCTGCAGGACTCGATGGCCCTGCT
CATAGTGGACAATGTGACGCGCGAGGATGAAGGCCAGTACACCTGCATCA
TAAGCGGCGACCACGATCCCCTCATCACTTCCACCACCGTCACCTTCCAC
GACTCGAATACGGAGATTCGCAGGCGTCGTGCTGTCATCACGGAACGACT
GCCCGAGATTACTAAATCGCTGGAGGGCGAGGTGATCGATCTGTGCTGCT
CCATCGAATGCGATGAACCCTACAGCTACGTTTGGTTGCGAAATGGCGAG
ATTCTGCCAGACAGCGATGAGTTCAATTACATTGATCACGGCAATGGACG
CCTCTGCCTGCGAATCAACGACGCCTTCGACATTGACTCCGGCATCTACA
GCTGTCAGGTGTTTACCAGCGACATCAACGACTCCACCTCCGACTCCACC
TTCGACTCCCATTCGATCTGCAGCTTAATCAACAGCGGATGCAGCGATTG
CAGCAGCAGCGGTGAGCTGTGCGTCCTGGAGCGTGATCTTCGTGGCCAGG
ATGAAGAGTGTGTTCAGCTGCTGAAGACGCCACTTCCGGTGGTCTGCGCA
TCCGGCGATGAAGCTCTCTTCTACGCCCGTGTTTTCCCCTGCGATGCGGA
AGCCGACTGGTATCTCAATGGCCAGCTTTTAGCCCAAGCGGATGACTCAC
TTAACATGACGTTTCAAATCCACAGCCTGATATACAATACCATATAAAAG
CTTTCTAGACCAT
BS28333.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:41:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Strn-Mlck-RJ | 1731 | CG44162-PJ | 1..1731 | 17..1747 | 8655 | 100 | Plus |
| Strn-Mlck-RV | 23835 | CG44162-PV | 20292..21989 | 16..1713 | 8490 | 100 | Plus |
| Strn-Mlck-RU | 24768 | CG44162-PU | 20292..21989 | 16..1713 | 8490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:41:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Strn-Mlck-RJ | 2176 | CG44162-RJ | 283..2014 | 16..1747 | 8660 | 100 | Plus |
| Strn-Mlck-RV | 24960 | CG44162-RV | 20866..22563 | 16..1713 | 8490 | 100 | Plus |
| Strn-Mlck-RU | 25666 | CG44162-RU | 20866..22563 | 16..1713 | 8490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:41:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15953902..15954774 | 914..42 | 4365 | 100 | Minus |
| 2R | 25286936 | 2R | 15953426..15953847 | 1326..905 | 2095 | 99.8 | Minus |
| 2R | 25286936 | 2R | 15952836..15953220 | 1711..1327 | 1925 | 100 | Minus |
| 2R | 25286936 | 2R | 15951780..15951816 | 1747..1711 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:41:11 has no hits.
BS28333.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 12:37:36 Download gff for
BS28333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Strn-Mlck-RJ | 284..2012 | 17..1745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:39 Download gff for
BS28333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Strn-Mlck-RJ | 284..2012 | 17..1745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:34:41 Download gff for
BS28333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Strn-Mlck-RJ | 284..2012 | 17..1745 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:34:41 Download gff for
BS28333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15951782..15951815 | 1712..1745 | 100 | <- | Minus |
| 2R | 15952836..15953220 | 1327..1711 | 100 | <- | Minus |
| 2R | 15953426..15953837 | 915..1326 | 100 | <- | Minus |
| 2R | 15953902..15954773 | 43..914 | 100 | <- | Minus |
| 2R | 15954833..15954858 | 17..42 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:39 Download gff for
BS28333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11839287..11839320 | 1712..1745 | 100 | <- | Minus |
| arm_2R | 11840341..11840725 | 1327..1711 | 100 | <- | Minus |
| arm_2R | 11840931..11841342 | 915..1326 | 100 | <- | Minus |
| arm_2R | 11841407..11842278 | 43..914 | 100 | <- | Minus |
| arm_2R | 11842338..11842363 | 17..42 | 100 | | Minus |
BS28333.pep Sequence
Translation from 16 to 1746
> BS28333.pep
MDKVHTRHGNIETLPRFVRNLRNLRCCDGDAISLECHVEADPEPFIIWEK
DGHVMPSDRDYVMSFDGTKATLSIPRVYPEDEGEYTCVAKNSVGRSLSSA
CIIVDVPEEKENMLSRQLARPSGLLSAHSTPRSTPRSTPARSFSPLRLSY
RTSSIDLSGVAERRRSDARNAITAPKFLAIPYNRVVEEGDSVRFQCAISG
HPTPWATWDKDGLIVTPTPRIAVKEIDDLRIIEIDEVTFDDAGLYRVTLE
NDFGRIEATARLDVIRSSRYSKSPSVRSVRASSSRRNAHLYRRIMGPSTA
IGGRMALASGYRGSSVPSVRFYHNDVELEASERVHILLQDSMALLIVDNV
TREDEGQYTCIISGDHDPLITSTTVTFHDSNTEIRRRRAVITERLPEITK
SLEGEVIDLCCSIECDEPYSYVWLRNGEILPDSDEFNYIDHGNGRLCLRI
NDAFDIDSGIYSCQVFTSDINDSTSDSTFDSHSICSLINSGCSDCSSSGE
LCVLERDLRGQDEECVQLLKTPLPVVCASGDEALFYARVFPCDAEADWYL
NGQLLAQADDSLNMTFQIHSLIYNTI*
BS28333.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:19:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Strn-Mlck-PJ | 576 | CG44162-PJ | 1..576 | 1..576 | 3013 | 100 | Plus |
| Strn-Mlck-PV | 7944 | CG44162-PV | 6765..7331 | 1..567 | 2958 | 99.6 | Plus |
| Strn-Mlck-PU | 8255 | CG44162-PU | 6765..7331 | 1..567 | 2958 | 99.6 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 6726..7292 | 1..567 | 2958 | 99.6 | Plus |
| Strn-Mlck-PS | 8216 | CG44162-PS | 6726..7292 | 1..567 | 2958 | 99.6 | Plus |
| Strn-Mlck-PV | 7944 | CG44162-PV | 6321..6615 | 175..463 | 191 | 26.8 | Plus |
| Strn-Mlck-PU | 8255 | CG44162-PU | 6321..6615 | 175..463 | 191 | 26.8 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 6282..6576 | 175..463 | 191 | 26.8 | Plus |
| Strn-Mlck-PV | 7944 | CG44162-PV | 5654..5959 | 32..361 | 159 | 24 | Plus |
| Strn-Mlck-PU | 8255 | CG44162-PU | 5654..5959 | 32..361 | 159 | 24 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 5615..5920 | 32..361 | 159 | 24 | Plus |
