BS28334.complete Sequence
1937 bp assembled on 2012-04-11
GenBank Submission: KX805244
> BS28334.complete
GAAGTTATCAGTCGACATGGCGACTGAAATCGACGATTTGATTGAAAAGC
TGAAGACGACCAGTGTCAGTCCGGCGAACACGACCAACTTGCTCTGCGAG
ATCTCGGCGACGAAGGACCCCAAACTTTTCGATAAGCACGAGCTGGCAGA
GTGCTTTCTGGGCCTCACCAAGTGCGACGACACAAACGTGCGCAAGGAGG
CGGCCAAGTGCATTGCGGAGATCACCAAGTCCGAGGTGCAGCGCAAGAAG
TTCACCAAGAGGAATATAATAGCCGCATTTCTGGAGTGCTTGCGACAAGT
GCCCACGTCCGACGGCAGTATGGAGCTGCCCATACAGATTTGTCGGGCAC
TGGGCAATATCTGCTACCTAAACGACGAAGCCAGGGACTTAATACTCGAG
CTGGAGGGCGATGCTGTTCTACTGCGACTGCTGGACATCACAACCATCGA
GGACGTGGCCAATGCGGCGCAATTCATCAAAGTGCGCGGCGGCTTGCTGT
CCAACTATTTGCTCGGAGGCGAGGGCTTGGCCAAGCGGGCCATGGAGTTG
GGCGTGATGAAGAAGCTGCAAGGCATCATCGACATTGGCGCCTCCAATGT
GGAACAGCATGAGGATCTGCTGCTGAACACGCTTCCACTGCTCAGTATAC
TCACCGAGAACGTGTCGGATCTGAACTTCGACTCTTCCCTGAATATCCAG
CTGTCTCGCATTCTGGCCGCTTCCACGAATCCCGATCTTGCCGAGATGTG
CCTGGAGCTGCTCCATTACCAGGCGGAGAGCGACGAAGTCAAGCTTATTT
TGGCCAAGGACGGTCTGTGCGAAACCATCTACAACCTGCTGGAAAAGTAC
AAGACTCTGGCCAGCACAAGTGAGGCCAGGGCGTTGATGAAACTCGCCTG
CGAACTCATCGTATTAATCCTTACTGGTGATGACTCAATGCACTATTTGT
ACACCACGCCGCTGCTGAAGAACATGGTCGATTGGCTGGACTCGACGGAC
ATCGATCTGCTAACCACCGGCGTGCTGGCCCTGGGCAACTTTGCGCGCAC
CGATAGCCACTGCATCTACTTTGTGGAGCAGCAGACCATGAACAAGCTGC
TCGAGGTGCTGGCCAAGAACAACGGCGTCAAGGACGATGTGCGCCTGCAG
CACGCTCTTCTCTCCGCGCTGCGCAACCTGGTCATCCCGAAGCCAAACAA
GAACGCGGTAATCCAGGCGGGCCTGGTGCAGACCATTCTTCCCATGCTCG
AAATACACCAGCCACCAGTCGTCTTCAAGCTGCTGGGCACACTTCGCATG
ACCGTCGACGGACAGGAGAAACTCGCACTGGAGTTGCTGAAGAACAAGAC
TCTGATCGAGCAGCTGGTGCACTGGAGCAAATCGTCGGACTATGCGGGCG
TCACCGGCGAGTCTCTGCGCCTCATGGCCTGGCTGATCAAGCACGCCTAC
CTCAGCAAAATCGCATACGCACTGCCGCGCAAGGGCGATGCACCCGCCGA
ACAGATTGCCGACAAGATTCCGCTAACGCAAGACTACGATCGCAGTAGCT
TGAGCGAGTTCCTTGCCAACGAGGGCACCGTGGAGGCCATGGTCAGCATG
CTCACAGCTCAGCACCTGGTCATGCAGAACGAGGCGCTGATTGCCCTGTG
CATCCTGTCCGTGGTGTACCTGTCGCAGCCCAGCGAGGCGGCGCAGGCCC
AGCTGCTGCAGGACGAGCTGGTCAAGTGCGAGGTCGGCAAGAAGTTGGCC
GAGCTCATCAGCAAGTCGTCGGACACGATGACCAAGGAGATTGTCGAGAA
CCTGCAGAATTGCGTGAACTTGCTCAAATCTTCCGAGCAGCTGGTGGCGC
ATCTGGAACAGCATAACATCAACGAGCTGCTGAAGTCTATACCCATTCTC
ACCGAATACTGCACCTTGTAAAAGCTTTCTAGACCAT
BS28334.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:39:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vimar-RB | 1905 | CG3572-PB | 1..1905 | 17..1921 | 9510 | 99.9 | Plus |
| vimar-RC | 1908 | CG3572-PC | 11..1908 | 24..1921 | 9475 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:39:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vimar-RB | 3467 | CG3572-RB | 293..2199 | 15..1921 | 9520 | 99.9 | Plus |
| vimar-RC | 3470 | CG3572-RC | 305..2202 | 24..1921 | 9475 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:39:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6977692..6978597 | 929..24 | 4530 | 100 | Minus |
| 2R | 25286936 | 2R | 6976553..6977158 | 1921..1316 | 3015 | 99.8 | Minus |
| 2R | 25286936 | 2R | 6977216..6977603 | 1316..929 | 1940 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:39:15 has no hits.
BS28334.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 12:37:33 Download gff for
BS28334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vimar-RB | 292..2194 | 17..1919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:29 Download gff for
BS28334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vimar-RB | 295..2197 | 17..1919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:33:52 Download gff for
BS28334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vimar-RB | 295..2197 | 17..1919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:33:52 Download gff for
BS28334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6976555..6977157 | 1317..1919 | 99 | <- | Minus |
| 2R | 6977216..6977602 | 930..1316 | 100 | <- | Minus |
| 2R | 6977692..6978602 | 17..929 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:29 Download gff for
BS28334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2864060..2864662 | 1317..1919 | 99 | <- | Minus |
| arm_2R | 2864721..2865107 | 930..1316 | 100 | <- | Minus |
| arm_2R | 2865197..2866107 | 17..929 | 99 | | Minus |
BS28334.pep Sequence
Translation from 16 to 1920
> BS28334.pep
MATEIDDLIEKLKTTSVSPANTTNLLCEISATKDPKLFDKHELAECFLGL
TKCDDTNVRKEAAKCIAEITKSEVQRKKFTKRNIIAAFLECLRQVPTSDG
SMELPIQICRALGNICYLNDEARDLILELEGDAVLLRLLDITTIEDVANA
AQFIKVRGGLLSNYLLGGEGLAKRAMELGVMKKLQGIIDIGASNVEQHED
LLLNTLPLLSILTENVSDLNFDSSLNIQLSRILAASTNPDLAEMCLELLH
YQAESDEVKLILAKDGLCETIYNLLEKYKTLASTSEARALMKLACELIVL
ILTGDDSMHYLYTTPLLKNMVDWLDSTDIDLLTTGVLALGNFARTDSHCI
YFVEQQTMNKLLEVLAKNNGVKDDVRLQHALLSALRNLVIPKPNKNAVIQ
AGLVQTILPMLEIHQPPVVFKLLGTLRMTVDGQEKLALELLKNKTLIEQL
VHWSKSSDYAGVTGESLRLMAWLIKHAYLSKIAYALPRKGDAPAEQIADK
IPLTQDYDRSSLSEFLANEGTVEAMVSMLTAQHLVMQNEALIALCILSVV
YLSQPSEAAQAQLLQDELVKCEVGKKLAELISKSSDTMTKEIVENLQNCV
NLLKSSEQLVAHLEQHNINELLKSIPILTEYCTL*
BS28334.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:19:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vimar-PB | 634 | CG3572-PB | 1..634 | 1..634 | 3169 | 100 | Plus |
| vimar-PC | 635 | CG3572-PC | 1..635 | 1..634 | 3157 | 99.8 | Plus |
