BS28336.complete Sequence
1933 bp assembled on 2012-05-10
GenBank Submission: KX800715
> BS28336.complete
GAAGTTATCAGTCGACATGGGCTCGTTCGCTATCCCCCACCCCCACTTAT
GTCGTGTCGTGTCGTTGTCTCTCTCTCTCTCTCGTACTCGCTCAAAGCCT
GTCACCCACTTTTCTGCGCCCGCTCGCCGGCTTTGGCGCGGCCTTAAAAC
CTTCACGACGTCTTGCAAACGGTTGAAAATGGAGAAGACTCCCCGGTACA
CGCAGCGGGAGCGGAACATGGTGTTGAGCTACGCGGCGCAGTACAAGGAT
GTGATCGAGAACAAGCGCACGGACGCGGAGTCCAACCGCAAGAAGGACGA
GGTGTGGCTGCAGATCGCCAAGGAGTTCAACTCGCGGGTCTACCACCAGC
GCAGCGCCAAGCAGCTGCGCCAGCTTTACAAGAACATGAAGCTGCTGCTC
AAAAAGGACCTATGCGGCGAGGACAAGAGCAACCATTCGTTCATGGACCT
GCTCAACACGCTGTCGCACCAGGAGTCCGTGGCCCAGTACATTGCCGAGC
AGCTGTCGCCGGAGGGCGCGGGCGGTGGCGGCGGCGGCGGTAAGCAAGGC
GGCGCGGGCAACGGAGGCGGAAACGGACACCAATCGGACGACTACGACGA
CTCCAAGATGCCCCACTACCACGAGGGCATGGACACGGACGTGATCCTTA
TCAAGTCGGAGACAATTAGCGACAACGAGCAGACGGACAATGGCATGGAC
TGCCTGGACGAGGACGATGACGACGACTGCTTGAGCCACAAGGCGCCGGA
GGTGTGCCTCGAGGAGGAGGACGACGTGCTCTTTCCAACGGACGTGCGCC
AGCTGCAGCAGGTGGGATCGTCCGGAGCCGCCGGCGGTGGTGTCTCCGGA
GGCTCCCTTCCCGGAAACATGTCTAGCAACGGGATTACCGAAACCAGTCG
CCGCGCCGCAAGCTCGCCCGTGTGCTCCACGAAGACCTCGATTAGTTCCA
GCGGGAGCTACGCATCAGCGCCCAAACCGGACATCACTATCCAGACCGTG
GGCCACATACGCGTGGGCAGCTTTGCCAACATCAACAAGACGCTGCAGAA
CGGCGGCTCCGGCACAGGAGCTGTCCTATCAGCGGCCAGCAATGGCGGCT
CCAGTGCCAGTGGAGTGCTGCCGCTCACAGCGGAGCAAGTGCAGCAGCAC
ACGCTGCTGAACGGCCTAGGATTGTCCGCCGTGAATCCGGCTCAGTCTCT
GCAGGCGGCCATCAATGCCGCCTATGGGTCCGCCGCTCCATCTTCATCGG
TCGCCATTAGCAGCCGCCGCACCCCTCCCACTCTGCAGTTGCCACGCCTT
CAGCGCGGAAACATCAACAATAGCCACCACACTGCCGGCAGCACAAGCAA
TTCCGCGGTGGCCTCCAATGGAGTGCAACTGTTGCTCAACGGCGGCCACC
ACGCACAGATGACGCACAACCATTTGGCGCGGGACAAGACAGGAGGCGTG
GCCATCGGGGCGGCGGGCAGTTTCAACGGGTACAACGGACTGGCAGTGGC
GGGCACAGTGTGCAGCGCCTTGAACAGCAGCGGATCCGGAGCCGGAAGCG
GCGGGAGCAGTGCCAACAACAGCGGCGTGGGCCTGGGGATCGGCGGGGCA
CACACGTCGGGCAGCGGAGGAAGTGGCAGCGGTGGGACGAGGAGCCAGCA
CCAGGAGCTGATGAATTCGCTGAGGATCGAGGAGAGCAAGCGGAAAATCG
ACCTGATCAACGCCCAAATCGAATACTGGCAGACGCTCACCCGCAAGCTG
AACAGTCAGGCGAATCACATGCCCAATCCTGCGTGCCCGTGCCACTTCCC
TGGAGCCAGTGTGCTCTCGCCCGTCGCCGTGACCGCCGCTAGTGCCTCAT
CGTCCGCTTCCGCCAATGTGTTGCAGACGCAGGCCAGCACCAGCTAGAAG
CTTTCTAGACCATTCGTGGGGCGCGCTAAAAGG
BS28336.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:55:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32813-RK | 1719 | CG32813-PK | 1..1719 | 179..1897 | 8595 | 100 | Plus |
| CG32813-RJ | 1719 | CG32813-PJ | 1..1719 | 179..1897 | 8595 | 100 | Plus |
| CG32813-RI | 1719 | CG32813-PI | 1..1719 | 179..1897 | 8595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:55:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32813-RJ | 3254 | CG32813-RJ | 96..1976 | 17..1897 | 9405 | 100 | Plus |
| CG32813-RB | 3438 | CG32813-RB | 409..2160 | 146..1897 | 8745 | 99.9 | Plus |
| CG32813-RK | 4058 | CG32813-RK | 1034..2780 | 151..1897 | 8735 | 100 | Plus |
| CG32813-RB | 3438 | CG32813-RB | 96..229 | 17..150 | 670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:55:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1390274..1391565 | 606..1897 | 6460 | 100 | Plus |
| X | 23542271 | X | 1389601..1390057 | 151..607 | 2285 | 100 | Plus |
| X | 23542271 | X | 1388663..1388796 | 17..150 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:55:26 has no hits.
BS28336.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-10 10:04:40 Download gff for
BS28336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-RC | 94..1974 | 17..1897 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:16 Download gff for
BS28336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-RJ | 96..1976 | 17..1897 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:16:55 Download gff for
BS28336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-RJ | 96..1976 | 17..1897 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:16:55 Download gff for
BS28336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1388663..1388796 | 17..150 | 100 | -> | Plus |
| X | 1389601..1390057 | 151..607 | 100 | -> | Plus |
| X | 1390276..1391565 | 608..1897 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:16 Download gff for
BS28336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1282696..1282829 | 17..150 | 100 | -> | Plus |
| arm_X | 1283634..1284090 | 151..607 | 100 | -> | Plus |
| arm_X | 1284309..1285598 | 608..1897 | 100 | | Plus |
BS28336.pep Sequence
Translation from 16 to 1896
> BS28336.pep
MGSFAIPHPHLCRVVSLSLSLSRTRSKPVTHFSAPARRLWRGLKTFTTSC
KRLKMEKTPRYTQRERNMVLSYAAQYKDVIENKRTDAESNRKKDEVWLQI
AKEFNSRVYHQRSAKQLRQLYKNMKLLLKKDLCGEDKSNHSFMDLLNTLS
HQESVAQYIAEQLSPEGAGGGGGGGKQGGAGNGGGNGHQSDDYDDSKMPH
YHEGMDTDVILIKSETISDNEQTDNGMDCLDEDDDDDCLSHKAPEVCLEE
EDDVLFPTDVRQLQQVGSSGAAGGGVSGGSLPGNMSSNGITETSRRAASS
PVCSTKTSISSSGSYASAPKPDITIQTVGHIRVGSFANINKTLQNGGSGT
GAVLSAASNGGSSASGVLPLTAEQVQQHTLLNGLGLSAVNPAQSLQAAIN
AAYGSAAPSSSVAISSRRTPPTLQLPRLQRGNINNSHHTAGSTSNSAVAS
NGVQLLLNGGHHAQMTHNHLARDKTGGVAIGAAGSFNGYNGLAVAGTVCS
ALNSSGSGAGSGGSSANNSGVGLGIGGAHTSGSGGSGSGGTRSQHQELMN
SLRIEESKRKIDLINAQIEYWQTLTRKLNSQANHMPNPACPCHFPGASVL
SPVAVTAASASSSASANVLQTQASTS*
BS28336.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:28:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32813-PK | 572 | CG32813-PK | 1..572 | 55..626 | 2938 | 100 | Plus |
| CG32813-PJ | 572 | CG32813-PJ | 1..572 | 55..626 | 2938 | 100 | Plus |
| CG32813-PI | 572 | CG32813-PI | 1..572 | 55..626 | 2938 | 100 | Plus |
| CG32813-PN | 572 | CG32813-PN | 1..572 | 55..626 | 2938 | 100 | Plus |
| CG32813-PM | 572 | CG32813-PM | 1..572 | 55..626 | 2938 | 100 | Plus |
