BS28337.complete Sequence
1625 bp assembled on 2012-04-11
GenBank Submission: KX805590
> BS28337.complete
GAAGTTATCAGTCGACATGTCCAGCCTGCGACCCGAGGAGGCCCGAAAAC
TGGCCACCGCCGCCTCCGTTTCGCCGCTGAGCAATTGCCAATTTTGCGGC
GTGGTAATCAGCTCGATTGCCGACGAGCAGAAGCTAGAGTTTACCAACAA
ATACAAGGGAAGCTGCACGCTGCTCTGCAGCTACGATTCCCAGGGTGTCG
TCCTCCGTGTTGTGTCAGACGACGACCGGAGCCACGTGCTCAAGGAGTAC
ATGATAGCCGCCGATACGGATGCCGCCCAAATGGGACGAAGGAGTTATGC
CGTTTCCCTGGACGCCGACAATCTAGTGCTGAGGTTTGCCAGCGAGCAGG
ACCAGCAGCTCTTCCGCAAAGTGGTGGAGAACGTGAAGCACTTGAGACCC
AAGTCCGTGTTCTCGCAGCGCACTGAGGAGTCGTCCGCCTCGCAGTACTT
CCAGTTCTACGGCTACCTCAGTCAGCAGCAGAACATGATGCAGGACTATG
TAAGGACAAGCACGTATCAGCGGGCCATTCTAGGCAATGCTGTGGATTTT
CAGGACAAGATCGTCCTGGATGTGGGCGCCGGCTCGGGCATTCTCTCCTT
CTTTGCCGTGCAGGCGGGAGCTGCCAAAGTGTACGCCATTGAGGCTTCCA
ACATGGCCCAGTACGCCCAGCAGCTGGTTGAGTCCAACAATGTGCAGCAT
AAGATCTCTGTGATACCGGGGAAGATCGAGGAGATCGAGCTGCCCGAGAA
AGTGGACGTTATCATATCAGAGCCTATGGGCTATATGCTGTACAACGAGC
GCATGTTGGAGACCTATCTGCATGCCAGAAAGTGGCTCAAGCCGCAAGGA
AAGATGTACCCCACGCACGGCGACTTGCACATAGCACCCTTTTCGGACGA
ATCGCTCTACTCGGAACAATATAACAAGGCCAACTTCTGGTACCAGTCGG
CGTTCCACGGCGTTGACCTTACCACGCTGCACAAAGAGGGCATGAAGGAG
TACTTCCGACAGCCCATTGTGGACACCTTCGACATCCGCATATGCATGGC
CAAGTCGGTGCGGCACGTGTGCGACTTTCTCAACGATAAGGAGGACGATC
TGCATTTGATAAGCATCCCCCTGGAGTTTCACATTCTGCAAACTGGCATC
TGCCATGGGCTGGCCTTTTGGTTTGATGTGGAGTTTAGCGGCAGCAGCCA
GAATGTGTGGCTCTCAACGTCGCCCACAGCGCCTCTGACACATTGGTATC
AGGTTCGCTGCCTTCTGCCCATGCCCATCTTTATTAAGCAGGGCCAGACG
CTGACCGGCCGTGTCTTACTGGAGGCCAATCGGCGGCAGTCGTATGACGT
GACCATCGACCTACACATCGAAGGCACGCTGATTTCGTCGAGCAACACCC
TGGACCTTAAGAATCCGTATTTTCGGTACACGGGGGCCCCGGTCCAGGCA
CCGCCGGGGACTAGTACCCAAAGTCCATCTGAGCAGTACTGGACACAAGT
GGACACGCAAGGATCACGCAATTCTTCAAGCATGCTAAATGGAGGGATCA
GCGTGAACGGAATAGGCGAAGGCATGGACATCACTCATGGACTTATGCAT
CCGCACTAGAAGCTTTCTAGACCAT
BS28337.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:41:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Art4-RB | 1593 | CG5358-PB | 1..1593 | 17..1609 | 7965 | 100 | Plus |
| Art4-RA | 1593 | CG5358-PA | 1..1593 | 17..1609 | 7965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:41:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Art4-RB | 3071 | CG5358-RB | 380..1974 | 15..1609 | 7975 | 100 | Plus |
| Art4-RA | 2701 | CG5358-RA | 380..1974 | 15..1609 | 7975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:41:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9984521..9985418 | 1113..216 | 4490 | 100 | Minus |
| 3R | 32079331 | 3R | 9984057..9984467 | 1523..1113 | 2055 | 100 | Minus |
| 3R | 32079331 | 3R | 9985478..9985681 | 218..15 | 1020 | 100 | Minus |
| 3R | 32079331 | 3R | 9983913..9983998 | 1609..1524 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:41:15 has no hits.
BS28337.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 12:37:37 Download gff for
BS28337.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art4-RA | 377..1969 | 17..1609 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:41 Download gff for
BS28337.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art4-RA | 382..1974 | 17..1609 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:34:43 Download gff for
BS28337.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art4-RA | 382..1974 | 17..1609 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:34:43 Download gff for
BS28337.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9983913..9983998 | 1524..1609 | 100 | <- | Minus |
| 3R | 9984057..9984467 | 1113..1523 | 100 | <- | Minus |
| 3R | 9984522..9985415 | 219..1112 | 100 | <- | Minus |
| 3R | 9985478..9985679 | 17..218 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:41 Download gff for
BS28337.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5809635..5809720 | 1524..1609 | 100 | <- | Minus |
| arm_3R | 5809779..5810189 | 1113..1523 | 100 | <- | Minus |
| arm_3R | 5810244..5811137 | 219..1112 | 100 | <- | Minus |
| arm_3R | 5811200..5811401 | 17..218 | 100 | | Minus |
BS28337.pep Sequence
Translation from 16 to 1608
> BS28337.pep
MSSLRPEEARKLATAASVSPLSNCQFCGVVISSIADEQKLEFTNKYKGSC
TLLCSYDSQGVVLRVVSDDDRSHVLKEYMIAADTDAAQMGRRSYAVSLDA
DNLVLRFASEQDQQLFRKVVENVKHLRPKSVFSQRTEESSASQYFQFYGY
LSQQQNMMQDYVRTSTYQRAILGNAVDFQDKIVLDVGAGSGILSFFAVQA
GAAKVYAIEASNMAQYAQQLVESNNVQHKISVIPGKIEEIELPEKVDVII
SEPMGYMLYNERMLETYLHARKWLKPQGKMYPTHGDLHIAPFSDESLYSE
QYNKANFWYQSAFHGVDLTTLHKEGMKEYFRQPIVDTFDIRICMAKSVRH
VCDFLNDKEDDLHLISIPLEFHILQTGICHGLAFWFDVEFSGSSQNVWLS
TSPTAPLTHWYQVRCLLPMPIFIKQGQTLTGRVLLEANRRQSYDVTIDLH
IEGTLISSSNTLDLKNPYFRYTGAPVQAPPGTSTQSPSEQYWTQVDTQGS
RNSSSMLNGGISVNGIGEGMDITHGLMHPH*
BS28337.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:19:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Art4-PB | 530 | CG5358-PB | 1..530 | 1..530 | 2765 | 100 | Plus |
| Art4-PA | 530 | CG5358-PA | 1..530 | 1..530 | 2765 | 100 | Plus |
| Art1-PA | 376 | CG6554-PA | 49..376 | 137..465 | 514 | 38 | Plus |
| Art2-PB | 355 | CG3675-PB | 33..331 | 144..451 | 456 | 34.5 | Plus |
| Art2-PA | 355 | CG3675-PA | 33..331 | 144..451 | 456 | 34.5 | Plus |
