BS28338.complete Sequence
611 bp assembled on 2012-03-08
GenBank Submission: KX805342
> BS28338.complete
GAAGTTATCAGTCGACATGTCGTTTGCGGAAAAGATAACGGGTCTGCTGG
CACGGCCGAATCAACAAGATCCAATTGGACCGGAGCAGCCGTGGTATCTC
AAATATGGAAGTCGATTGCTGGGCATTGTGGCCGCCTTCTTTGCCATTCT
TTTCGGCCTGTGGAATGTGTTCTCCATCATCACGCTCAGCGTATCCTGCC
TGGTGGCTGGCATCCTTCAAATGGTGGCAGGATTTGTGGTGATGCTCTTG
GAGGCTCCCTGCTGTTTCGTCTGCTTTGGGCAGGTGAACGAGATCGCGGA
AAAGGTGGAATCTAAGCCCTTGTACTTCCGTGCCGGGCTCTACATTGCCA
TGGCCATTCCGCCCATTATTCTGTGCTTTGGACTGGCCAGCTTATTCGGC
AGTGGGCTGATCTTTGGCACTGGCGTGGTTTACGGCATGATGGCGTTAGG
CAAGAAAGCTTCTCGAGAGGACATGGCCGCCGCTGCCACATCGCCCACAC
AGATGGCCGGCAGTCAGGCGGGCGGTCAGATGCAGATGGGCGGCGATCAG
CATATCACACTCATGGAAGACCCCGATGTCTGGCGCCCCACATAAAAGCT
TTCTAGACCAT
BS28338.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:41:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fwe-RB | 579 | CG6151-PB | 1..579 | 17..595 | 2895 | 100 | Plus |
| fwe-RA | 585 | CG6151-PA | 1..459 | 17..475 | 2220 | 98.9 | Plus |
| fwe-RC | 474 | CG6151-PC | 1..440 | 17..456 | 2200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:41:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fwe-RB | 3020 | CG6151-RB | 134..714 | 16..596 | 2905 | 100 | Plus |
| fwe-RA | 1342 | CG6151-RA | 134..593 | 16..475 | 2225 | 98.9 | Plus |
| fwe-RC | 2364 | CG6151-RC | 134..574 | 16..456 | 2205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:41:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15813419..15813626 | 348..141 | 1040 | 100 | Minus |
| 3L | 28110227 | 3L | 15812758..15812897 | 596..457 | 700 | 100 | Minus |
| 3L | 28110227 | 3L | 15815936..15816057 | 140..19 | 610 | 100 | Minus |
| 3L | 28110227 | 3L | 15813246..15813353 | 456..349 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 07:41:57 has no hits.
BS28338.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:31 Download gff for
BS28338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| flower-RB | 140..716 | 17..593 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:10 Download gff for
BS28338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fwe-RB | 135..711 | 17..593 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:02:00 Download gff for
BS28338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fwe-RB | 135..711 | 17..593 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:02:00 Download gff for
BS28338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15815936..15816058 | 17..140 | 99 | | Minus |
| 3L | 15813246..15813353 | 349..456 | 100 | <- | Minus |
| 3L | 15813419..15813626 | 141..348 | 100 | <- | Minus |
| 3L | 15812761..15812897 | 457..593 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:10 Download gff for
BS28338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15805861..15805997 | 457..593 | 100 | <- | Minus |
| arm_3L | 15806346..15806453 | 349..456 | 100 | <- | Minus |
| arm_3L | 15806519..15806726 | 141..348 | 100 | <- | Minus |
| arm_3L | 15809036..15809158 | 17..140 | 99 | | Minus |
BS28338.pep Sequence
Translation from 16 to 594
> BS28338.pep
MSFAEKITGLLARPNQQDPIGPEQPWYLKYGSRLLGIVAAFFAILFGLWN
VFSIITLSVSCLVAGILQMVAGFVVMLLEAPCCFVCFGQVNEIAEKVESK
PLYFRAGLYIAMAIPPIILCFGLASLFGSGLIFGTGVVYGMMALGKKASR
EDMAAAATSPTQMAGSQAGGQMQMGGDQHITLMEDPDVWRPT*
BS28338.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:50:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fwe-PB | 192 | CG6151-PB | 1..192 | 1..192 | 995 | 100 | Plus |
| fwe-PA | 194 | CG6151-PA | 1..157 | 1..157 | 793 | 98.7 | Plus |
| fwe-PC | 157 | CG6151-PC | 1..146 | 1..146 | 754 | 100 | Plus |
