BS28339.complete Sequence
1427 bp assembled on 2012-03-08
GenBank Submission: KX800543
> BS28339.complete
GAAGTTATCAGTCGACATGGAGCAGGAAATCGGCACCTGGGACTCGGTAC
TGTTGGAGAACCTGTCCGAGGATAGTTTCATAAACAACATCCACCAGCGC
TATAAGCGCGATCACATATATACCTACATTGGAACATCTGTTGTGGCTCT
GAATCCATATCATCACATATCCGAGCACTCTCTGGACAATGTCCGCAACT
ATGGCGATAAGGGCATTTTCCAGCTGCCGCCCCACATATATGGTCTCACA
AATCTGGCTTATCAATCGCTCAAAGATCAGAGCGAGGATCAGTGTGTTCT
GCTCACCGGTGAGAGCGGAGCGGGCAAAACGGAGACTTTTAAAATGATCG
TGAACTTTCTGACCCACATACAAGATCGCTCCCACTGCCCCCCAACACCG
AATGTTTTGCGCAAGCAATCCTCAACTAGCTCGGCCAGCGGATTGGTGAT
GCACGCCCACAGGCGAGCCTCCAGCAGCTGCTCCGGCACTGCCAATTTTA
TTATATGCAAAAACCGGGCGGAAAATCCGTCAGGCAGTGTTTCACGGCGA
CAAAGTCCATCGCCAGGACCATCGCAGCGATCGCGGACGCGGGCCGAGAG
CATCGAGCGCCAAAGCAGGCGCCACATGCGGGAGAAAATTGTCGACTTTG
ATTTCTCACACCACAAGAGTAGCGAAAACATCAGCGGCCTTCCTGAATCG
CACGCCCACCACATGCATCCGACCAAGTCGTGCTTCAAGCACCAGCAGAC
CCAAGTCAGCGCCTGCACTGCAATGCCCGCAGCAGCCAAGGGATCGCCCA
AATACGCGGTACCCACCGTGTACGGCGGTTGCCGCCAGTGCGGACACAGC
AAGTGTGTCCGTGCTCAGAGCCTGGAAAAGGAGGAGCGGGATGATCTACG
AGGCAGCAACTGCCGCCTGTCTACCATAGCCACTGCCACCACCAATCCGG
CACATCCGCATCGCGGTAGTTGCTCCAACCTGATGCGCCAGCACTCGACA
GAGAGTCAGCCGGAGCGGGAGCGGGATCGAAGCTCCCTTATGGGGTCCAC
GCAACGTATATCGCTGTACGATGCACACAAGCTGAGTAAGGTTCTGGGCG
ATCTGCCGCCGCCTCCGCCTAGTTCTGTTTCGCCCACGCCATCGGCCAGC
TCTTCGCTGCACAGGCGTCATAAATCGCCCACGCAACGAATGCGAGAGTG
CGTCACCTGTGCGGATGTGTTCCTGGAGGCCATGGGCAATGCCTGCACCC
TGAAAAATAATAACTCTAGTCGATATGGAAAGCTATTTGATATCGAAATT
GATTTTAAGGGAGATCCAATGGGAGTGCACATTACCCATTACCCGTATAA
CGGACCCTATCATTGGAGAGCGAAATTTTCACATCTTTTACCAATTACTA
TTAGGAGCTGAAAGCTTTCTAGACCAT
BS28339.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:42:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Myo95E-RG | 1395 | CG5501-PG | 1..1395 | 17..1411 | 6975 | 100 | Plus |
| Myo95E-RF | 1395 | CG5501-PF | 1..1395 | 17..1411 | 6975 | 100 | Plus |
| Myo95E-RE | 3867 | CG5501-PE | 1..1409 | 17..1411 | 6800 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:42:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Myo95E-RG | 5302 | CG5501-RG | 260..1654 | 17..1411 | 6975 | 100 | Plus |
| Myo95E-RF | 4267 | CG5501-RF | 157..1551 | 17..1411 | 6975 | 100 | Plus |
| Myo95E-RE | 5316 | CG5501-RE | 260..1668 | 17..1411 | 6800 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:42:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24159647..24160686 | 1277..238 | 5200 | 100 | Minus |
| 3R | 32079331 | 3R | 24160747..24160862 | 237..122 | 580 | 100 | Minus |
| 3R | 32079331 | 3R | 24160926..24161030 | 121..17 | 525 | 100 | Minus |
| 3R | 32079331 | 3R | 24159256..24159326 | 1411..1341 | 355 | 100 | Minus |
| 3R | 32079331 | 3R | 24159476..24159539 | 1340..1277 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 07:42:45 has no hits.
BS28339.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:31 Download gff for
BS28339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myo95E-RG | 260..1653 | 17..1410 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:15 Download gff for
BS28339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myo95E-RF | 157..1550 | 17..1410 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:02:16 Download gff for
BS28339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myo95E-RF | 157..1550 | 17..1410 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:02:16 Download gff for
BS28339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24159257..24159326 | 1341..1410 | 100 | <- | Minus |
| 3R | 24159476..24159539 | 1277..1340 | 100 | <- | Minus |
| 3R | 24159648..24160686 | 238..1276 | 100 | <- | Minus |
| 3R | 24160747..24160862 | 122..237 | 100 | <- | Minus |
| 3R | 24160926..24161030 | 17..121 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:15 Download gff for
BS28339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19984979..19985048 | 1341..1410 | 100 | <- | Minus |
| arm_3R | 19985198..19985261 | 1277..1340 | 100 | <- | Minus |
| arm_3R | 19985370..19986408 | 238..1276 | 100 | <- | Minus |
| arm_3R | 19986469..19986584 | 122..237 | 100 | <- | Minus |
| arm_3R | 19986648..19986752 | 17..121 | 100 | | Minus |
BS28339.pep Sequence
Translation from 16 to 1410
> BS28339.pep
MEQEIGTWDSVLLENLSEDSFINNIHQRYKRDHIYTYIGTSVVALNPYHH
ISEHSLDNVRNYGDKGIFQLPPHIYGLTNLAYQSLKDQSEDQCVLLTGES
GAGKTETFKMIVNFLTHIQDRSHCPPTPNVLRKQSSTSSASGLVMHAHRR
ASSSCSGTANFIICKNRAENPSGSVSRRQSPSPGPSQRSRTRAESIERQS
RRHMREKIVDFDFSHHKSSENISGLPESHAHHMHPTKSCFKHQQTQVSAC
TAMPAAAKGSPKYAVPTVYGGCRQCGHSKCVRAQSLEKEERDDLRGSNCR
LSTIATATTNPAHPHRGSCSNLMRQHSTESQPERERDRSSLMGSTQRISL
YDAHKLSKVLGDLPPPPPSSVSPTPSASSSLHRRHKSPTQRMRECVTCAD
VFLEAMGNACTLKNNNSSRYGKLFDIEIDFKGDPMGVHITHYPYNGPYHW
RAKFSHLLPITIRS*
BS28339.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:50:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Myo95E-PG | 464 | CG5501-PG | 1..464 | 1..464 | 2483 | 100 | Plus |
| Myo95E-PF | 464 | CG5501-PF | 1..464 | 1..464 | 2483 | 100 | Plus |
| Myo95E-PE | 1288 | CG5501-PE | 1..442 | 1..442 | 2355 | 100 | Plus |
| Myo95E-PJ | 1258 | CG5501-PJ | 1..440 | 1..440 | 2328 | 99.5 | Plus |
| Myo95E-PB | 1258 | CG5501-PB | 1..440 | 1..440 | 2328 | 99.5 | Plus |
