BS28340.complete Sequence
1994 bp assembled on 2012-04-11
GenBank Submission: KX801700
> BS28340.complete
GAAGTTATCAGTCGACATGGATCGCAAGGCTGAGCTGGAACGCAAGAAGG
CCAAGTTGGCCGCCCTGCGCGAGGAGAAGGATCGCCGGCGTCGCGAGAAG
GAGATCAAGGACATGGAGGAGGCGGCCGGTCGCATTGGCGGCGGAGCAGG
CATCGACAAGGATCAGCGCAAGGATCTCGACGAAATGCTGTCATCGCTGG
GCGTGGCCCCCGTCTCCGAGGTCCTTTCCTCACTCTCCTCCGTCAACTCG
ATGACTTCGGACAACTCGAACACACAGACCCCCGACGCCAGCCTCCAAGC
CACTGTCAATGGCCAGAGCGGCGGAAAGAAACAGCCCCTCAACCTAAGCG
TCTACAATGTGCAGGCTACGAACATTCCACCAAAAGAGACACTGGTCTAC
ACAAAGCAGACCCAGACGACCAGTACCGGAGGCGGAAACGGCGATGGATA
TATGGAGGACTGGTGGCGTCCACGTAAAGCTCATGCTACGGATTATTATG
ATGAATACAATCTTAATCCGGGTTTAGAGTGGGAGGATGAATTCACAGAC
GACGAAGAGAGCTCACTGCAGAACCTGGGCAACGGATTCACCTCCAAGCT
GCCACCGGGCTATCTCACCCACGGCCTGCCCACCGTTAAGGACGTCGCCC
CGGCCATCACACCACTCGAGATCAAGAAGGAGACTGAAGTGAAGAAGGAG
GTCAACGAGCTGTCCGAGGAGCAGAAGCAGATGATCATACTGTCGGAGAA
CTTCCAGCGGTTCGTGGTGCGTGCCGGCCGCGTCATCGAACGGGCCCTCT
CGGAGAATGTGGACATATACACGGACTACATCGGCGGCGGCGACAGCGAG
GAGGCGAACGACGAGCGATCGCATGCGCGGCTCTCGCTGAACCGCGTCTT
CTACGACGAGCGCTGGTCGAAGAACCGCTGCATCACCAGTATGGACTGGT
CCACCCACTTCCCCGAGCTGGTGGTGGGCTCGTACCACAACAACGAGGAG
AGTCCGAACGAGCCGGACGGCGTGGTGATGGTGTGGAACACCAAGTTCAA
GAAGAGCACGCCCGAGGACGTCTTCCACTGCCAGAGCGCGGTGATGTCCA
CCTGCTTTGCCAAGTTCAATCCCAACCTGATCCTCGGCGGCACCTATTCG
GGCCAGATTGTGCTGTGGGACAATCGCGTGCAGAAGCGCACGCCCATACA
GCGCACGCCCCTCAGTGCCGCGGCGCACACGCATCCCGTCTACTGCCTCC
AAATGGTGGGCACCCAGAATGCGCACAACGTCATCTCCATATCCTCGGAC
GGCAAGCTGTGCTCCTGGTCGCTGGACATGCTGTCGCAACCACAGGACAC
GCTGGAGCTGCAGCAGCGCCAGTCGAAGGCCATTGCCATTACATCGATGG
CCTTCCCGGCCAACGAGATCAATAGCCTGGTGATGGGCAGTGAGGACGGC
TACGTCTACTCCGCCTCGCGCCACGGCCTGCGCTCCGGGGTCAACGAGGT
TTACGAACGCCATCTTGGCCCTATCACTGGCATATCCACGCACTACAACC
AGCTGTCGCCGGACTTTGGCCACCTCTTCCTAACCTCGTCCATTGACTGG
ACCATCAAGCTCTGGTCGCTAAAGGACACAAAGCCGCTGTACTCCTTTGA
GGACAACTCCGACTACGTGATGGACGTCGCCTGGTCGCCCGTGCATCCCG
CACTCTTCGCCGCCGTCGACGGCAGCGGCCGCCTGGATCTGTGGAACCTC
AACCAAGACACGGAGGTGCCGACCGCCTCGATTGTCGTGGCGGGAGCACC
AGCCCTTAACCGCGTCTCTTGGACCCCATCCGGTCTGCACGTGTGCATCG
GCGACGAGGCCGGCAAGCTGTACGTGTACGACGTGGCCGAGAACCTGGCG
CAGCCATCGCGCGACGAATGGTCGCGGTTCAACACCCATCTTAGCGAGAT
CAAGATGAACCAGAGCGATGAGGTCTAGAAGCTTTCTAGACCAT
BS28340.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:42:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sw-RK | 1962 | CG18000-PK | 1..1962 | 17..1978 | 9795 | 99.9 | Plus |
| sw-RJ | 1992 | CG18000-PJ | 460..1992 | 446..1978 | 7650 | 99.9 | Plus |
| sw-RE | 1929 | CG18000-PE | 430..1929 | 479..1978 | 7485 | 99.9 | Plus |
| sw-RJ | 1992 | CG18000-PJ | 1..430 | 17..446 | 2150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:42:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sw-RK | 2756 | CG18000-RK | 200..2161 | 17..1978 | 9795 | 99.9 | Plus |
| sw-RJ | 2786 | CG18000-RJ | 659..2191 | 446..1978 | 7650 | 99.9 | Plus |
| sw-RE | 3070 | CG18000-RE | 813..2312 | 479..1978 | 7485 | 99.9 | Plus |
| sw-RJ | 2786 | CG18000-RJ | 200..629 | 17..446 | 2150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:42:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20229139..20230063 | 1625..701 | 4610 | 99.9 | Minus |
| X | 23542271 | X | 20205922..20206846 | 1625..701 | 4595 | 99.8 | Minus |
| X | 23542271 | X | 20174931..20175855 | 1625..701 | 4580 | 99.7 | Minus |
| X | 23542271 | X | 20190482..20191406 | 1625..701 | 4580 | 99.7 | Minus |
| X | 23542271 | X | 20198198..20199122 | 1625..701 | 4580 | 99.7 | Minus |
| X | 23542271 | X | 20182758..20183682 | 1625..701 | 4565 | 99.6 | Minus |
| X | 23542271 | X | 20213615..20214507 | 1593..701 | 4435 | 99.8 | Minus |
| X | 23542271 | X | 20221297..20222189 | 1593..701 | 4435 | 99.8 | Minus |
| X | 23542271 | X | 20182338..20182693 | 1978..1623 | 1780 | 100 | Minus |
| X | 23542271 | X | 20228719..20229074 | 1978..1623 | 1780 | 100 | Minus |
| X | 23542271 | X | 20220879..20221226 | 1978..1631 | 1695 | 99.1 | Minus |
| X | 23542271 | X | 20190123..20190417 | 1917..1623 | 1430 | 99 | Minus |
| X | 23542271 | X | 20197839..20198133 | 1917..1623 | 1430 | 99 | Minus |
| X | 23542271 | X | 20205563..20205857 | 1917..1623 | 1430 | 99 | Minus |
| X | 23542271 | X | 20213258..20213544 | 1917..1631 | 1390 | 99 | Minus |
| X | 23542271 | X | 20235508..20235663 | 172..17 | 780 | 100 | Minus |
| X | 23542271 | X | 20230441..20230595 | 701..547 | 775 | 100 | Minus |
| X | 23542271 | X | 20176238..20176392 | 701..547 | 775 | 100 | Minus |
| X | 23542271 | X | 20184060..20184214 | 701..547 | 775 | 100 | Minus |
| X | 23542271 | X | 20191789..20191943 | 701..547 | 775 | 100 | Minus |
| X | 23542271 | X | 20199505..20199659 | 701..547 | 775 | 100 | Minus |
| X | 23542271 | X | 20207229..20207383 | 701..547 | 775 | 100 | Minus |
| X | 23542271 | X | 20214885..20215039 | 701..547 | 775 | 100 | Minus |
| X | 23542271 | X | 20222567..20222721 | 701..547 | 775 | 100 | Minus |
| X | 23542271 | X | 20235288..20235434 | 318..172 | 735 | 100 | Minus |
| X | 23542271 | X | 20174589..20174768 | 1978..1793 | 655 | 91.4 | Minus |
| X | 23542271 | X | 20234774..20234904 | 447..317 | 655 | 100 | Minus |
| X | 23542271 | X | 20178269..20178399 | 447..317 | 640 | 99.2 | Minus |
| X | 23542271 | X | 20186144..20186274 | 447..317 | 640 | 99.2 | Minus |
| X | 23542271 | X | 20193874..20194004 | 447..317 | 640 | 99.2 | Minus |
| X | 23542271 | X | 20201590..20201720 | 447..317 | 640 | 99.2 | Minus |
| X | 23542271 | X | 20209260..20209390 | 447..317 | 640 | 99.2 | Minus |
| X | 23542271 | X | 20216916..20217046 | 447..317 | 640 | 99.2 | Minus |
| X | 23542271 | X | 20224651..20224781 | 447..317 | 640 | 99.2 | Minus |
| X | 23542271 | X | 20232117..20232165 | 548..500 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:42:52 has no hits.
BS28340.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 12:37:37 Download gff for
BS28340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RK | 384..2345 | 17..1978 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:44 Download gff for
BS28340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RK | 200..2161 | 17..1978 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:35:20 Download gff for
BS28340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RK | 200..2161 | 17..1978 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:35:20 Download gff for
BS28340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20228719..20229072 | 1625..1978 | 100 | <- | Minus |
| X | 20229140..20230062 | 702..1624 | 99 | <- | Minus |
| X | 20230441..20230593 | 549..701 | 100 | <- | Minus |
| X | 20232117..20232164 | 501..548 | 100 | <- | Minus |
| X | 20233423..20233443 | 480..500 | 100 | <- | Minus |
| X | 20234328..20234360 | 447..479 | 100 | <- | Minus |
| X | 20234775..20234902 | 319..446 | 100 | <- | Minus |
| X | 20235288..20235434 | 172..318 | 100 | <- | Minus |
| X | 20235509..20235663 | 17..171 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:44 Download gff for
BS28340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20099793..20100146 | 1625..1978 | 100 | <- | Minus |
| arm_X | 20100214..20101136 | 702..1624 | 99 | <- | Minus |
| arm_X | 20101515..20101667 | 549..701 | 100 | <- | Minus |
| arm_X | 20103191..20103238 | 501..548 | 100 | <- | Minus |
| arm_X | 20104497..20104517 | 480..500 | 100 | <- | Minus |
| arm_X | 20105402..20105434 | 447..479 | 100 | <- | Minus |
| arm_X | 20105849..20105976 | 319..446 | 100 | <- | Minus |
| arm_X | 20106362..20106508 | 172..318 | 100 | <- | Minus |
| arm_X | 20106583..20106737 | 17..171 | 100 | | Minus |
BS28340.pep Sequence
Translation from 16 to 1977
> BS28340.pep
MDRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGAGIDKDQ
RKDLDEMLSSLGVAPVSEVLSSLSSVNSMTSDNSNTQTPDASLQATVNGQ
SGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDGYMEDWW
RPRKAHATDYYDEYNLNPGLEWEDEFTDDEESSLQNLGNGFTSKLPPGYL
THGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFV
VRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERW
SKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWNTKFKKSTPE
DVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLS
AAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQ
RQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHL
GPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDY
VMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVPTASIVVAGAPALNRV
SWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDEWSRFNTHLSEIKMNQS
DEV*
BS28340.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:19:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sw-PK | 653 | CG18000-PK | 1..653 | 1..653 | 3436 | 100 | Plus |
| sw-PJ | 663 | CG18000-PJ | 1..663 | 1..653 | 3415 | 98.5 | Plus |
| sw-PE | 642 | CG18000-PE | 1..642 | 1..653 | 3341 | 98.3 | Plus |
| sw-PD | 643 | CG18000-PD | 1..643 | 1..653 | 3329 | 98.2 | Plus |
| sw-PL | 643 | CG18000-PL | 1..643 | 1..653 | 3329 | 98.2 | Plus |
