BS28341.complete Sequence
581 bp assembled on 2012-03-08
GenBank Submission: KX806396
> BS28341.complete
GAAGTTATCAGTCGACATGCATGCCAGATTTGCGGATCCCGAGCCAGCGT
CTCCGGACAGCGTTGATGGAATCGAAACGGAGTCACTGGAGGCGCGGATT
GAGGCCTTCAAGCAAAATCCCCAGAACATGGCCGCGTTGCGGGAGGCGCT
CGACGATGTGCTCCTGCGGGCTGAGACGGAGGCGAACAGGCGGGCAGTTG
AGAGCCAGAAATCGCAACAGGGCAAGGAAAAACGACCGAGTTTCGCCATA
CCAGATTTTAAGAACGGCAAGGTGGTGAATCGCGCTCGAGGATTCGTGGT
GCGGATCTTCGATGCCATATGCAATTGCGCCAACAACAATGCGGCGGCGG
CCACGACGCGTTTCAAGCTGAGAAGCAACAGCGGCGGAGGGGGAGGCGGC
GGAGGTGGTGGTGGCGGAGCCAGCGGAAATGGCAAGCGTCAGCAGTCGCA
GAATGAGCCGGAAACCCTAGTCCTGACCAAGAAGAAGCCCGCCGGCGAAG
GCAAGAAAAAGAAGGGAGTCAGCATGGCCGATGACGTTCAAGCCGGCGTT
CGACTGATGGACTAAAAGCTTTCTAGACCAT
BS28341.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:48:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9368-RA | 549 | CG9368-PA | 1..549 | 17..565 | 2745 | 100 | Plus |
| CG9368-RB | 534 | CG9368-PB | 1..534 | 17..565 | 2485 | 97.3 | Plus |
| CG9368-RD | 264 | CG9368-PD | 1..225 | 17..241 | 1125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:48:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9368-RA | 1828 | CG9368-RA | 141..689 | 17..565 | 2745 | 100 | Plus |
| CG9368-RB | 1813 | CG9368-RB | 141..674 | 17..565 | 2485 | 97.3 | Plus |
| CG9368-RD | 2423 | CG9368-RD | 959..1284 | 240..565 | 1630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:48:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19602656..19602981 | 240..565 | 1630 | 100 | Plus |
| 3L | 28110227 | 3L | 19601773..19601977 | 17..221 | 1025 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:48:07 has no hits.
BS28341.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:32 Download gff for
BS28341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-RA | 119..665 | 17..563 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:23 Download gff for
BS28341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-RA | 141..687 | 17..563 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:04:13 Download gff for
BS28341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-RA | 141..687 | 17..563 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:04:13 Download gff for
BS28341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19601773..19601976 | 17..220 | 100 | -> | Plus |
| 3L | 19602042..19602060 | 221..239 | 100 | -> | Plus |
| 3L | 19602656..19602979 | 240..563 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:23 Download gff for
BS28341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19594873..19595076 | 17..220 | 100 | -> | Plus |
| arm_3L | 19595142..19595160 | 221..239 | 100 | -> | Plus |
| arm_3L | 19595756..19596079 | 240..563 | 100 | | Plus |
BS28341.pep Sequence
Translation from 16 to 564
> BS28341.pep
MHARFADPEPASPDSVDGIETESLEARIEAFKQNPQNMAALREALDDVLL
RAETEANRRAVESQKSQQGKEKRPSFAIPDFKNGKVVNRARGFVVRIFDA
ICNCANNNAAAATTRFKLRSNSGGGGGGGGGGGGASGNGKRQQSQNEPET
LVLTKKKPAGEGKKKKGVSMADDVQAGVRLMD*
BS28341.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:50:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9368-PA | 182 | CG9368-PA | 1..182 | 1..182 | 929 | 100 | Plus |
| CG9368-PB | 177 | CG9368-PB | 1..177 | 1..182 | 883 | 96.7 | Plus |
| CG9368-PD | 87 | CG9368-PD | 1..75 | 1..75 | 373 | 100 | Plus |
