Clone BS28342 Report

Search the DGRC for BS28342

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:283
Well:42
Vector:pDNR-Dual
Associated Gene/Transcripttsu-RA
Protein status:BS28342.pep: full length peptide match
Sequenced Size:530

Clone Sequence Records

BS28342.complete Sequence

530 bp assembled on 2012-03-08

GenBank Submission: KX802840

> BS28342.complete
GAAGTTATCAGTCGACATGGCCGATGTGTTGGACATTGACAATGCGGAGG
AGTTCGAGGTGGACGAGGACGGTGACCAGGGCATTGTGCGCCTGAAGGAA
AAGGCGAAGCACCGCAAGGGACGCGGATTTGGAAGCGACAGTAACACCCG
AGAGGCGATCCACAGCTACGAGCGTGTGCGCAACGAGGACGACGATGAGC
TGGAACCTGGTCCACAAAGGTCCGTCGAGGGCTGGATACTGTTTGTCACC
TCTATCCATGAGGAGGCGCAGGAGGACGAGATTCAGGAAAAGTTCTGCGA
TTACGGAGAAATCAAGAACATTCACCTGAACCTCGACCGGCGTACTGGGT
TCTCAAAGGGATACGCTCTCGTCGAGTACGAGACCCACAAGCAGGCGCTC
GCCGCCAAAGAGGCCCTGAACGGTGCCGAAATAATGGGACAGACCATTCA
GGTTGACTGGTGCTTCGTTAAGGGACCGAAGCGCGTTAAAAAGTCCGAAA
AGCGTCGCAGATAAAAGCTTTCTAGACCAT

BS28342.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
tsu-RA 498 CG8781-PA 1..498 17..514 2490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
tsu-RA 691 CG8781-RA 98..596 17..515 2495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:48:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9111046..9111483 78..515 2190 100 Plus
2R 25286936 2R 9110896..9110956 17..77 305 100 Plus
Blast to na_te.dros performed on 2014-11-28 07:48:30 has no hits.

BS28342.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:33 Download gff for BS28342.complete
Subject Subject Range Query Range Percent Splice Strand
tsu-RA 96..591 17..512 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:25 Download gff for BS28342.complete
Subject Subject Range Query Range Percent Splice Strand
tsu-RA 98..593 17..512 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:04:21 Download gff for BS28342.complete
Subject Subject Range Query Range Percent Splice Strand
tsu-RA 98..593 17..512 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:04:21 Download gff for BS28342.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9110896..9110956 17..77 100 -> Plus
2R 9111046..9111480 78..512 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:25 Download gff for BS28342.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4998401..4998461 17..77 100 -> Plus
arm_2R 4998551..4998985 78..512 100   Plus

BS28342.pep Sequence

Translation from 16 to 513

> BS28342.pep
MADVLDIDNAEEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHS
YERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIK
NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF
VKGPKRVKKSEKRRR*

BS28342.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
tsu-PA 165 CG8781-PA 1..165 1..165 866 100 Plus