BS28346.complete Sequence
1193 bp assembled on 2012-03-08
GenBank Submission: KX804372
> BS28346.complete
GAAGTTATCAGTCGACATGGAACACTTTCATCAAATACAGCAGCAATTGG
CTGCTCAGCAACAACAACAAGTACAACAGCAACAGTTGCAACAACACCAG
GTGGTCGTCCAGCAGAATCAGCAGCAGGCGCACCAGAACAGCTCCAATAC
CACAGCCGGCGTGGGCACCCAACAGCTGTTCACATACAAAATGGCCAGCA
GTTTTCCGAATCCGGCCACGACGATGGCCCAAGTGGTGGCCACATCGAAC
GCAGCCGGCACCACGGGCTATGATTATCGTCTAAATATGGCACAGGCAGC
CGCAGCAGCAGCCGTACCCGGCTCCCAGTGGTGGTATTCGGCCGCCAATC
AGGGACAGGTCGATGCCAATACAGCGGCGCAACTGCAGCACCAGCAGCAG
CAACAGCAACAGCAACAACAGCAGCAGCAGCAACAGCACCAGCAGCAACA
ACAGATGCAACAGCAGCAGCAGCAACAGAATGTCATCAATTCGGCGAGCC
CCATGAGCAGAGTCAAGGCCGATGCCAAGCCCAGAGGCCGAATGACCGCC
TACGCATACTTTGTACAAACTTGCAGAGAGGAGCACAAAAAGAAACATCC
CGATGAGACGGTGATATTCGCCGAATTCTCGCGGAAGTGCGCCGAACGGT
GGAAGACAATGGTGGACAAGGAGAAGAAGCGCTTCCACGAAATGGCCGAG
AAGGACAAGCAGCGATATGAGGCGGAAATGCAGAACTATGTGCCGCCCAA
GGGAGCGGTTGTGGGACGCGGCAAGAAGAGGAAACAGATCAAGGACCCCA
ATGCTCCAAAACGTTCATTGTCTGCGTTCTTCTGGTTCTGCAATGACGAG
AGAAATAAGGTGAAGGCACTTAATCCCGAGTTCGGAGTGGGCGACATCGC
CAAAGAGCTGGGACGAAAGTGGTCCGATGTGGATCCCGAGGTCAAGCAGA
AGTACGAGTCGATGGCCGAGCGGGACAAGGCTCGATATGAACGCGAGATG
ACCGAGTACAAGACGAGCGGGAAAATAGCCATGTCCGCACCGTCGATGCA
GGCGTCGATGCAGGCGCAGGCACAGAAAGCCGCGTTACTTGCCGCCGCTG
CCCAGCAGCAGCACCAGCAGCTGGAAGAGCAGCACGACGACGACGACGGC
GATGGAGATGATGACGAGAACCAATAGAAGCTTTCTAGACCAT
BS28346.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:40:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsp1-RG | 1161 | CG12223-PG | 1..1161 | 17..1177 | 5805 | 100 | Plus |
| Dsp1-RD | 1161 | CG12223-PD | 1..1161 | 17..1177 | 5805 | 100 | Plus |
| Dsp1-RC | 1158 | CG12223-PC | 1..1158 | 17..1177 | 5725 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:40:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsp1-RG | 2359 | CG12223-RG | 122..1282 | 17..1177 | 5805 | 100 | Plus |
| Dsp1-RD | 2903 | CG12223-RD | 779..1939 | 17..1177 | 5805 | 100 | Plus |
| Dsp1-RC | 4511 | CG12223-RC | 718..1875 | 17..1177 | 5725 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:40:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16336285..16336743 | 38..496 | 2295 | 100 | Plus |
| X | 23542271 | X | 16337625..16337807 | 995..1177 | 915 | 100 | Plus |
| X | 23542271 | X | 16337381..16337556 | 820..995 | 880 | 100 | Plus |
| X | 23542271 | X | 16337084..16337251 | 654..821 | 840 | 100 | Plus |
| X | 23542271 | X | 16336850..16337009 | 496..655 | 800 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 07:40:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2402..2854 | 19..480 | 333 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2837 | 29..478 | 288 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6880 | 1061..1183 | 134 | 61.4 | Plus |
BS28346.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:29 Download gff for
BS28346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsp1-RD | 779..1939 | 17..1177 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:59 Download gff for
BS28346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsp1-RD | 779..1939 | 17..1177 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:01:20 Download gff for
BS28346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsp1-RD | 779..1939 | 17..1177 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:01:20 Download gff for
BS28346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16337381..16337555 | 820..994 | 100 | -> | Plus |
| X | 16337625..16337807 | 995..1177 | 100 | | Plus |
| X | 16337086..16337249 | 656..819 | 100 | -> | Plus |
| X | 16334390..16334413 | 17..40 | 100 | -> | Plus |
| X | 16336288..16336743 | 41..496 | 100 | -> | Plus |
| X | 16336851..16337009 | 497..655 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:59 Download gff for
BS28346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16228423..16228446 | 17..40 | 100 | -> | Plus |
| arm_X | 16230321..16230776 | 41..496 | 100 | -> | Plus |
| arm_X | 16230884..16231042 | 497..655 | 100 | -> | Plus |
| arm_X | 16231119..16231282 | 656..819 | 100 | -> | Plus |
| arm_X | 16231414..16231588 | 820..994 | 100 | -> | Plus |
| arm_X | 16231658..16231840 | 995..1177 | 100 | | Plus |
BS28346.pep Sequence
Translation from 16 to 1176
> BS28346.pep
MEHFHQIQQQLAAQQQQQVQQQQLQQHQVVVQQNQQQAHQNSSNTTAGVG
TQQLFTYKMASSFPNPATTMAQVVATSNAAGTTGYDYRLNMAQAAAAAAV
PGSQWWYSAANQGQVDANTAAQLQHQQQQQQQQQQQQQQQHQQQQQMQQQ
QQQQNVINSASPMSRVKADAKPRGRMTAYAYFVQTCREEHKKKHPDETVI
FAEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYEAEMQNYVPPKGAVVG
RGKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGR
KWSDVDPEVKQKYESMAERDKARYEREMTEYKTSGKIAMSAPSMQASMQA
QAQKAALLAAAAQQQHQQLEEQHDDDDGDGDDDENQ*
BS28346.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:50:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsp1-PG | 386 | CG12223-PG | 1..386 | 1..386 | 2010 | 100 | Plus |
| Dsp1-PD | 386 | CG12223-PD | 1..386 | 1..386 | 2010 | 100 | Plus |
| Dsp1-PC | 385 | CG12223-PC | 1..385 | 1..386 | 1993 | 99.7 | Plus |
| Dsp1-PA | 385 | CG12223-PA | 1..385 | 1..386 | 1993 | 99.7 | Plus |
| Dsp1-PB | 385 | CG12223-PB | 1..385 | 1..386 | 1993 | 99.7 | Plus |
