Clone BS28347 Report

Search the DGRC for BS28347

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:283
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG42819-RA
Protein status:BS28347.pep: gold
Sequenced Size:473

Clone Sequence Records

BS28347.complete Sequence

473 bp assembled on 2012-03-08

GenBank Submission: KX805638

> BS28347.complete
GAAGTTATCAGTCGACATGCGCAGCTACGTGAAGTCATCCTGTTCCTTGC
TGGTTCTGGTCCTGGCACTTGGAGCGGTTTCAGCTCAGCCAGCACGGCTG
GCAAAGCAACTTCAGAAACAGCAGGCAGCACCCTATCCATCCGCCGACGA
ACTGAAGCCGGAGGTGCCATTCGAGGAAGGAGTTCCGGATCAGACATATG
GACCACCGGATCTGACCTACGGCCCACCGCCTACCGATGCAGTTGAGCAG
CTACCCAGCGATGAGGAGCCGCAAGACTTTACACCCGATCCGGATGCAGA
GGAAGTTCAGCCTGTCCAGCAGGCACCCGCTCGCCTGACCAAGCAGATTA
GGAACGGTCCACGAGCTCAAGGACTGATTCTGCTCTCATCGAGTCCATTG
AGAGTGGCTAATTCCAATGGAATCCCATTCCCAGTGACCATTCAAGCCCT
GTGGTAGAAGCTTTCTAGACCAT

BS28347.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG42819-RA 441 CG42819-PA 1..441 17..457 2205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG42819-RA 604 CG42819-RA 63..503 17..457 2205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8388829..8389269 457..17 2205 100 Minus
Blast to na_te.dros performed on 2014-11-28 07:40:27 has no hits.

BS28347.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:29 Download gff for BS28347.complete
Subject Subject Range Query Range Percent Splice Strand
CG42819-RA 36..476 17..457 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:04 Download gff for BS28347.complete
Subject Subject Range Query Range Percent Splice Strand
CG42819-RA 63..503 17..457 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:01:30 Download gff for BS28347.complete
Subject Subject Range Query Range Percent Splice Strand
CG42819-RA 63..503 17..457 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:01:30 Download gff for BS28347.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8388829..8389269 17..457 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:04 Download gff for BS28347.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8388829..8389269 17..457 100   Minus

BS28347.pep Sequence

Translation from 16 to 456

> BS28347.pep
MRSYVKSSCSLLVLVLALGAVSAQPARLAKQLQKQQAAPYPSADELKPEV
PFEEGVPDQTYGPPDLTYGPPPTDAVEQLPSDEEPQDFTPDPDAEEVQPV
QQAPARLTKQIRNGPRAQGLILLSSSPLRVANSNGIPFPVTIQALW*

BS28347.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG42819-PA 146 CG42819-PA 1..146 1..146 754 100 Plus