Clone BS28350 Report

Search the DGRC for BS28350

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:283
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG32068-RB
Protein status:BS28350.pep: gold
Sequenced Size:593

Clone Sequence Records

BS28350.complete Sequence

593 bp assembled on 2012-03-08

GenBank Submission: KX804861

> BS28350.complete
GAAGTTATCAGTCGACATGGTGCAGGTTTGGTATATGGATACGGAGGAAA
CCGATCAGCGCCTGGAGCACCACCGCAATCCGCCTGCCTACTTGGAACTG
GATGATCTGTACCAGAAGACCGGCGTGGAATACTTTAAGATCAATGCGGA
CGAGTACCAGAGCGATAATACCCTCACGGAACTGAGGGCAAAACGTGGCT
ACACCTACGATGATGAGATCACATGCTCGGAAAAGTGCCTTCCAGACTAT
GCCAACAAGTTGAAAGCCTTTTTCACCGAACACCTGCACACGGATGAGGA
AATTCGCCTGATATTGGAGGGATCCGGTTACTTTGATGTTCGCGACAATG
AGGACAACTGGTTGCGCATTAAGGTTGTCAAGGGAGATCTGATCATTATA
CCAGCTGGCATATATCACCGCTTTACTTTGGATACCAATAACTTTATCAG
AACTCGTCGCTATTTTGTGGGCGAACCTGTCTGGGCTCCACACAATCGTC
CTGCTGATGAAATGGACTGTCGCAAATCGTACATCAAGCATCAGTCGGAA
AACTTTGTGCAATTCAATAAGGTTTAAAAGCTTTCTAGACCAT

BS28350.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG32068-RB 561 CG32068-PB 1..561 17..577 2805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG32068-RB 701 CG32068-RB 71..633 17..579 2815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:55:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10664228..10664367 440..579 700 100 Plus
3L 28110227 3L 10663788..10663917 216..345 650 100 Plus
3L 28110227 3L 10663446..10663568 17..139 615 100 Plus
3L 28110227 3L 10664075..10664168 346..439 470 100 Plus
3L 28110227 3L 10663648..10663727 138..217 400 100 Plus
Blast to na_te.dros performed 2014-11-28 07:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 3299..3400 514..415 136 62.1 Minus

BS28350.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:37 Download gff for BS28350.complete
Subject Subject Range Query Range Percent Splice Strand
CG32068-RB 58..616 17..575 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:52 Download gff for BS28350.complete
Subject Subject Range Query Range Percent Splice Strand
CG32068-RB 71..629 17..575 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:07:14 Download gff for BS28350.complete
Subject Subject Range Query Range Percent Splice Strand
CG32068-RB 71..629 17..575 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:07:14 Download gff for BS28350.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10663446..10663568 17..139 100 -> Plus
3L 10663650..10663727 140..217 100 -> Plus
3L 10663790..10663917 218..345 100 -> Plus
3L 10664075..10664168 346..439 100 -> Plus
3L 10664228..10664363 440..575 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:52 Download gff for BS28350.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10656546..10656668 17..139 100 -> Plus
arm_3L 10656750..10656827 140..217 100 -> Plus
arm_3L 10656890..10657017 218..345 100 -> Plus
arm_3L 10657175..10657268 346..439 100 -> Plus
arm_3L 10657328..10657463 440..575 100   Plus

BS28350.pep Sequence

Translation from 16 to 576

> BS28350.pep
MVQVWYMDTEETDQRLEHHRNPPAYLELDDLYQKTGVEYFKINADEYQSD
NTLTELRAKRGYTYDDEITCSEKCLPDYANKLKAFFTEHLHTDEEIRLIL
EGSGYFDVRDNEDNWLRIKVVKGDLIIIPAGIYHRFTLDTNNFIRTRRYF
VGEPVWAPHNRPADEMDCRKSYIKHQSENFVQFNKV*

BS28350.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG32068-PB 186 CG32068-PB 1..186 1..186 1015 100 Plus