BS28354.complete Sequence
1856 bp assembled on 2012-04-11
GenBank Submission: KX806526
> BS28354.complete
GAAGTTATCAGTCGACATGTCCGGCAATCAACAGCAGCAGCAACAGCAAC
AGAAGTCATTAACTAACAACGCGGCAGCAGCAGCAACAAACGAAGCAACC
ACTTTGGGCCATAATTTGATAAAAATAAATAGCGTTGACAAAATAGTAGG
CAAAAGTCAGGCAGCAACGCAGGCAATTAACAAACTACAGCAGCAGCAGC
AGCAGCAGCACCAACAACAACAAATCCACCAGCGTCGCTCATTGCTGCCA
GCAACAGGAGGAGCAACGAATCCCCACCAGCCACACTCATCGCAGCAACA
AAGCGGAACGCCAACGCCAACAGCTCAGTCGGCAGCCCAAAAACAGCAGC
AGCAGCAGCAACAATCACATCAATTGCAGACGGTGGCCACGATACACCAG
CCGCACTCCACGCAGCAGCAGGCATTGACTTCCCGCCTGCCCATCCAGCA
GCAATCGACTAAAGAATTGCCCAATCTAGCCGGCCAGCAGCGCCGCAGCT
TCCACTACCAGTTGCAAAATCAGCAGCAATCTCTGCGCAGCCCGCAGCTG
AAGGCACCGGCACCCGCCCACTCCATCCCGCCGAGATACCAGCCACCGCC
GCAGCCGGCCACCGGGATCCTAAAGCCGCACTTGCCACTCAAGTATCCGC
CGGATATCCCCCAGCTATCTAGCATCTACATTCCCGACTCCATCAAGCAG
CAGCAACAACAACAACAGCAGCAACAGTCGCGATATCTACCAGCACACCA
GCCGGGAGCGAAGGATATGCTGAAGTTTGTGCGCAAGCCAGACCAGGAAC
ACCCATCGCCCAATGCCTCGGTCACGTCCAGCGGCACGGGAATACCCACG
GCCAATGGCGGAGGTCGCCTGACCGCCGAGCAGAACCGGCAGTTGCAGTC
GTTGGTCAACGAACTGCGTGCGCTGAAGGAGCAGAATCAGCGCCTGCTGG
ACGACAACCAGGAGTTGCGGGATCTGTGCTGCTTCCTGGACGACGACCGG
CAGAAGGGACGCAAGCTGGCGCGGGAATGGCAAAGATTTGGGCGATACAC
GGCCAGCGTGATGCGGCAGGAGGTGGCCGCGTACCAGAACAAACTACGTC
AGCTGGATGATAAGCAGCAAGAGCTAATCACCGATAATCTAGAGCTCAAG
GAGCTCTGCCTCTACTTGGACGAGGAGCGTGCCCATGTGGCGGCAAATGC
GCTGTGCGCCGGTTGCGGAGCAGCCACTAGGAATGCGCTTCGAGATGACG
GCGATGGTTCCAGCTCCAGCACGAATGCAGATGAGACCATCACCGCCTTG
AGGAACTATGCAGAGCAGCGGCAACTACCCCAGGATCTACGTCATGCCCA
CACGCTGAACGACCAGACGCTTCAGTATGTGCGCTCACTGGAGCGCCGCA
TCCAGCAACTGGAGGAGGAGCGCACCACGCCCACGGCCCATCTACAACAG
CCGACGACGCCCACGCCGCAGGCCACGCCGACGCCAACGGTCACATCTGC
AGCCACTCCAGCCAAATCAGCAGCATCGCCCCACCAGCAGCAGCAGCAGC
AGCAGCAACATCAACAGCAGCAGCAAGACATCGTGGCCGCTGCAGCGGCG
GCAGCAGCTGCTATCCAACTGCCGGAGCCGATTGCCGGACGACCAGAGGC
GGTGGTTCGAGCCCTCCAGGTGCTCGAGGTGCGGGAGCAGCTGGAGCGCG
ATCGGCTTGGCAACCTAGCTGGAAGCGCACTCGACCAGATGGATGACGGC
GAGAAGGCGCTGGTCCGCGAGATGTGCAACGTGGTCTGGCGCAAACTGGA
GGGCAGTCCACATGGACCGGCGGCCCTGGAGCCGCTCTAAAAGCTTTCTA
GACCAT
BS28354.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:43:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17265-RA | 1824 | CG17265-PA | 1..1824 | 17..1840 | 9105 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:43:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17265-RA | 3261 | CG17265-RA | 831..2654 | 17..1840 | 9105 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:43:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3013502..3014572 | 17..1087 | 5355 | 100 | Plus |
| 2L | 23513712 | 2L | 3014953..3015462 | 1331..1840 | 2535 | 99.8 | Plus |
| 2L | 23513712 | 2L | 3014636..3014885 | 1085..1334 | 1250 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 04:43:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2294..2849 | 172..754 | 367 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..3002 | 29..730 | 353 | 56.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2297..2852 | 141..727 | 309 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..3003 | 150..755 | 269 | 57.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2615..2981 | 12..373 | 245 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2796..2999 | 22..232 | 229 | 62.2 | Plus |
| BS | 5142 | BS BS 5142bp | 2041..2104 | 199..266 | 141 | 72.1 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3291..3336 | 185..230 | 113 | 71.7 | Plus |
BS28354.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 12:37:39 Download gff for
BS28354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17265-RA | 2..1823 | 17..1838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:48 Download gff for
BS28354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17265-RA | 831..2652 | 17..1838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:35:27 Download gff for
BS28354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17265-RA | 831..2652 | 17..1838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:35:27 Download gff for
BS28354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3013502..3014572 | 17..1087 | 100 | -> | Plus |
| 2L | 3014639..3014884 | 1088..1333 | 100 | -> | Plus |
| 2L | 3014956..3015460 | 1334..1838 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:48 Download gff for
BS28354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3013502..3014572 | 17..1087 | 100 | -> | Plus |
| arm_2L | 3014639..3014884 | 1088..1333 | 100 | -> | Plus |
| arm_2L | 3014956..3015460 | 1334..1838 | 99 | | Plus |
BS28354.pep Sequence
Translation from 16 to 1839
> BS28354.pep
MSGNQQQQQQQQKSLTNNAAAAATNEATTLGHNLIKINSVDKIVGKSQAA
TQAINKLQQQQQQQHQQQQIHQRRSLLPATGGATNPHQPHSSQQQSGTPT
PTAQSAAQKQQQQQQQSHQLQTVATIHQPHSTQQQALTSRLPIQQQSTKE
LPNLAGQQRRSFHYQLQNQQQSLRSPQLKAPAPAHSIPPRYQPPPQPATG
ILKPHLPLKYPPDIPQLSSIYIPDSIKQQQQQQQQQQSRYLPAHQPGAKD
MLKFVRKPDQEHPSPNASVTSSGTGIPTANGGGRLTAEQNRQLQSLVNEL
RALKEQNQRLLDDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMR
QEVAAYQNKLRQLDDKQQELITDNLELKELCLYLDEERAHVAANALCAGC
GAATRNALRDDGDGSSSSTNADETITALRNYAEQRQLPQDLRHAHTLNDQ
TLQYVRSLERRIQQLEEERTTPTAHLQQPTTPTPQATPTPTVTSAATPAK
SAASPHQQQQQQQQHQQQQQDIVAAAAAAAAAIQLPEPIAGRPEAVVRAL
QVLEVREQLERDRLGNLAGSALDQMDDGEKALVREMCNVVWRKLEGSPHG
PAALEPL*
BS28354.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17265-PA | 607 | CG17265-PA | 1..607 | 1..607 | 3117 | 100 | Plus |
| ptip-PA | 2294 | CG32133-PA | 580..1106 | 48..559 | 227 | 23.5 | Plus |
| dikar-PG | 3080 | CG42799-PG | 2230..2762 | 6..532 | 217 | 25.2 | Plus |
| Smr-PF | 3601 | CG4013-PF | 78..409 | 2..283 | 216 | 28.4 | Plus |
| Smr-PE | 3601 | CG4013-PE | 78..409 | 2..283 | 216 | 28.4 | Plus |
| ptip-PA | 2294 | CG32133-PA | 252..731 | 5..520 | 213 | 23.3 | Plus |
| ptip-PA | 2294 | CG32133-PA | 193..683 | 54..525 | 209 | 22.2 | Plus |
| ptip-PA | 2294 | CG32133-PA | 763..1335 | 7..523 | 205 | 23.4 | Plus |
| ptip-PA | 2294 | CG32133-PA | 205..727 | 5..520 | 193 | 23.5 | Plus |
| ptip-PA | 2294 | CG32133-PA | 835..1358 | 5..523 | 183 | 22.4 | Plus |
| Smr-PF | 3601 | CG4013-PF | 18..285 | 16..290 | 183 | 25.2 | Plus |
| Smr-PF | 3601 | CG4013-PF | 60..276 | 5..279 | 181 | 28 | Plus |
| ptip-PA | 2294 | CG32133-PA | 1052..1327 | 1..265 | 173 | 25.9 | Plus |
| ptip-PA | 2294 | CG32133-PA | 1121..1362 | 6..246 | 173 | 27.2 | Plus |
