BS28355.complete Sequence
3332 bp assembled on 2012-04-11
GenBank Submission: KX806533
> BS28355.complete
GAAGTTATCAGTCGACATGGCCGAAAAGAATGAGTACATCGAATTACCTT
GGACCATGAACTCCTCCAGCGGCGATGACGAGGCGCCGAAGGATCCGCGC
ACTGGCGGCGAGGATTTTACGCAACAATTTACAGAGAATGATTTCGAGGG
ACATCGGGCCCACACCGTTTATGTGGGCGTCCATGTGCCAGGAGGACGAC
GCCACTCGCAGCGCCGCCGCAAGCATCACCACAGTGGCCCCGGAGGTGGT
GGCGGTGGCGGAGGTGGAGGCGGCTCCATCGGCGGATCCGGAAGTGTGGG
CGGTGGTGCGGGCAAGGACAACGTCAGCGAGAAGCAACAGGAAGTGGAGC
GACCAGTGACTCCGCCGGCACAGCGAGTTCAATTCATACTTGGCGAGGAT
GTGGACGATGGCACACACGTATCGCATCCCCTGTTTTCGGAAATGGGGAT
GCTGGTCAAGGAGGGCGACGAGATCGAGTGGAAGGAGACAGCGCGATGGA
TCAAATTCGAGGAGGATGTGGAGGAGGGTGGCAATCGATGGTCGAAGCCG
CACGTGGCCACGCTCTCCCTGCACTCCCTGTTCGAGCTGCGTCGCCTGCT
GGTCAATGGCAGCGTGATGCTGGACATGGAGGCCCAAAATCTGGAGGTGA
TGGCCGATCTCGTGTGCGATCACATGGTCAGTGCGGGAACATTGCCGCCC
GGTGTAAAGGATAAGGTCAAGGACGCGCTCCTGCGACGACATCGGCATCA
GCACGAGTATGCCAAAAAGACGCGACTGCCAATTATTCGATCCCTGGCCG
ATATGCGCAATCACTCGTCATCAAAAAAGAAAAAATCTAATTCTAAACAC
TCGCGACCCGCACAAAACCTGTCATCGATCACAGAGGACATGGTCAAGAG
TCCCAGTAACCAGTCGATGGCCAGGCCAGGAAGCGGAACGGAACTCAGCG
AGCAGCAGCACAAGGGCAACACCCACTTCATGAGGAAGATACCGCCGGGC
GCGGAGGCCAGCAACATTCTCGTGGGCGAGGTTGATTTCCTGGAGCGCAC
CCTGTCCTGTTTCATCCGTCTGAGCCAGGCGGTCGTCCTGGGCGATCTCA
CCGAGGTGCCAGTGCCCACAAGATTCGTCTTCATACTGCTTGGTCCGCCT
GGCAGTCAGAGCAACTTCCACGAGATTGGCCGCGCGATGGCCACCCTGAT
GTCCGACGAGATCTTTCACGAGGTGGCGTACCGTGCCCGCAAGCGGGATC
ATCTGCTCTCCGGAGTGGATGAGTTCCTCGATGCGGTGACCGTACTGCCG
CCAGGAGAATGGGATCCAACCATACGAATTGAGCCACCAGCGGCGATTCC
CTCGCAGGAAGTCAGGAAGCGGCCGCCAGAGTTGCCCAAGGAGGAGGTGG
ACGAGGAGGAGGAGGAAGCGCGTCTTCGCGAGGAGAACGGACTGTCCAGG
ACGGGAAGGCTTTTCGGAGGCCTCATCAACGACATCAAGAGGAAGGCGCC
GTGGTACATAAGCGATTACAAGGACGCCCTATCCATGCAGTGCGTGGCAT
CGTGGATCTTTCTGTACTTCGCCTGCCTGTCGCCGATCATCACGTTCGGA
GGACTCCTGGCGGAGGCCACTGGCAAGCACATGGCTGCGATGGAGTCCTT
GGTCTCTGGTTTCGTTTGTGGCATGGGCTATGGCTTCTTTTCGGGTCAGC
CGCTGACAATTCTCGGGTCCACCGGTCCAGTCCTGGTCTTTGAGTCAATT
ATCTACGAGTTCTGTCTGAAGATGGGCTGGGACTATATGACTTTCCGGTT
CTGGATCGGCATGTGGGTCGCCGGCATTTGCATCGTCCTGACCGCGATTG
ATGCCAGTGCCCTCGTCTGCTACATCACCCGCTTCACCGAGGAGAACTTC
GCCACCCTGATCGCTTTCATCTTCATCTACAAGGCTATTGAGAACGTGAT
GGTCATTGGAAAGAACTTCCCGGTCAATCAGGGCATATACGACTGTGTCT
GTACACCGCCAATTGGGAGCAATGCCAGTGTGATCGATTATGCCAAGTAC
AATTGGGATTCTTGTGAGTCCTACAATGGCACCTTGGTTGGTGGAGATTG
CGGAACGCCGCCCACCGAAAACGTTTTCCTCATGTCGGTGGTCCTCTGCG
CCGGCACCTTCCTCATCTCCACCGTGCTGAAGGAGTTCAAAAACGCCCTA
TTCTTCCCATCGATTGTCCGCCAGTATATCAGCGATTTCTCCGTTCTCAT
CGCGATTTTCGCCATGAGTTTCTTCGACTATTCGCTGGGAGTTCCCACCC
AGAAACTGGAGGTACCCAACGAGCTGAAGCCCACGCTAAGCACCAGAGGC
TGGCTCATCCCGCCGTTCGTCGAGAAGAATCCCTGGTGGTCGGCGATCAT
TGCCGTATTCCCTGCCCTTCTCGGAACCATCCTGATCTTCATGGACCAGC
AGATCACGGCCGTTATTGTGAACCGAAAGGAGAACAAACTGAAGAAGGGA
TGTGGCTACCATCTGGATCTGTTCATTCTCTCCATTCTGATTGCCATCTG
CAGCATGATGGGTCTGCCTTGGTTCGTGGCCGCCACCGTGCTGAGCATCA
ACCACGTGAACTCGCTGAAACTGGAGTCGGAGTGCTCGGCCCCTGGTGAG
AAGCCACAGTTCCTGGGAGTGCGCGAGCAGCGGGTGACCCACATCTTGAT
CTTCCTGACCATCGGCGTCTCCGTGCTGTTGACCCCGCTGCTCGGTAACA
TTCCTATGCCGGTTCTTTTCGGTGTCTTTCTGTATATGGGCGTGGCCTCA
CTCAAGGGCTTACAGTTCTTCGATCGCATACTGATTATGTTCATGCCGGC
GAAGTACCAGCCAGACTATATGTTCCTGCGCCAGGTTCCCATTAAACGCG
TCCACCTGTTCACCATGATCCAGCTGGCCTGCCTCATAATTCTCTGGCTG
ATCAAGTCCTTCTCACAGACATCCATTCTGTTTCCCCTGATGTTGGTGGT
GATGATTGGCATCAGAAAGGCCCTGGATCTGGTGTTCACTCGGCGCGAGC
TGAAGATCCTGGACGACATAATGCCGGAGATGACGAAGCGTGCGGCGGCG
GATGATCTGCATAAACTGGACGCTGAGGTGGGCTTATTGGCGCGCATTTT
CCCCTGGGGAAAAGGCAGCCGGAGCAGGGTGGTGACCAAGCCGCCGGGCC
TTGATGATGGAATCGTTGGGTCTGGTGGTGCCGTTGGCGCTGGACTCATC
ACTTGCACCACCTCAAATGCAAATGAGAAGGAGTTCGAGGCACAGAGTAG
TCTGCTCAAAAAGTAGAAGCTTTCTAGACCAT
BS28355.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:52:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ndae1-RB | 3300 | CG42253-PB | 1..3300 | 17..3316 | 16500 | 100 | Plus |
| Ndae1-RE | 3261 | CG42253-PE | 1..3261 | 56..3316 | 16305 | 100 | Plus |
| Ndae1-RC | 3573 | CG42253-PC | 1..3112 | 17..3128 | 15560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:52:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ndae1-RB | 4046 | CG42253-RB | 294..3597 | 17..3320 | 16520 | 100 | Plus |
| Ndae1-RE | 4563 | CG42253-RE | 516..3790 | 46..3320 | 16375 | 100 | Plus |
| Ndae1-RC | 4517 | CG31906-RA | 294..3405 | 17..3128 | 15560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:52:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7229653..7230600 | 2068..1121 | 4740 | 100 | Minus |
| 2L | 23513712 | 2L | 7229094..7229600 | 2573..2067 | 2535 | 100 | Minus |
| 2L | 23513712 | 2L | 7234527..7234999 | 827..355 | 2365 | 100 | Minus |
| 2L | 23513712 | 2L | 7226911..7227349 | 3320..2882 | 2195 | 100 | Minus |
| 2L | 23513712 | 2L | 7228698..7229013 | 2886..2571 | 1580 | 100 | Minus |
| 2L | 23513712 | 2L | 7230889..7231183 | 1122..828 | 1475 | 100 | Minus |
| 2L | 23513712 | 2L | 7236145..7236352 | 356..149 | 1040 | 100 | Minus |
| 2L | 23513712 | 2L | 7237686..7237790 | 150..46 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:52:48 has no hits.
BS28355.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 18:06:08 Download gff for
BS28355.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndae1-RB | 291..3590 | 17..3316 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:38 Download gff for
BS28355.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndae1-RB | 294..3593 | 17..3316 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:39:13 Download gff for
BS28355.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndae1-RB | 294..3593 | 17..3316 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:39:13 Download gff for
BS28355.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7226915..7227346 | 2885..3316 | 100 | <- | Minus |
| 2L | 7228700..7229012 | 2572..2884 | 100 | <- | Minus |
| 2L | 7229096..7229598 | 2069..2571 | 100 | <- | Minus |
| 2L | 7229653..7230598 | 1123..2068 | 100 | <- | Minus |
| 2L | 7230889..7231183 | 828..1122 | 100 | <- | Minus |
| 2L | 7234527..7234997 | 357..827 | 100 | <- | Minus |
| 2L | 7236145..7236351 | 150..356 | 100 | <- | Minus |
| 2L | 7237687..7237790 | 46..149 | 100 | <- | Minus |
| 2L | 7240182..7240210 | 17..45 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:38 Download gff for
BS28355.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7226915..7227346 | 2885..3316 | 100 | <- | Minus |
| arm_2L | 7228700..7229012 | 2572..2884 | 100 | <- | Minus |
| arm_2L | 7229096..7229598 | 2069..2571 | 100 | <- | Minus |
| arm_2L | 7229653..7230598 | 1123..2068 | 100 | <- | Minus |
| arm_2L | 7230889..7231183 | 828..1122 | 100 | <- | Minus |
| arm_2L | 7234527..7234997 | 357..827 | 100 | <- | Minus |
| arm_2L | 7236145..7236351 | 150..356 | 100 | <- | Minus |
| arm_2L | 7237687..7237790 | 46..149 | 100 | <- | Minus |
| arm_2L | 7240182..7240210 | 17..45 | 100 | | Minus |
BS28355.pep Sequence
Translation from 16 to 3315
> BS28355.pep
MAEKNEYIELPWTMNSSSGDDEAPKDPRTGGEDFTQQFTENDFEGHRAHT
VYVGVHVPGGRRHSQRRRKHHHSGPGGGGGGGGGGGSIGGSGSVGGGAGK
DNVSEKQQEVERPVTPPAQRVQFILGEDVDDGTHVSHPLFSEMGMLVKEG
DEIEWKETARWIKFEEDVEEGGNRWSKPHVATLSLHSLFELRRLLVNGSV
MLDMEAQNLEVMADLVCDHMVSAGTLPPGVKDKVKDALLRRHRHQHEYAK
KTRLPIIRSLADMRNHSSSKKKKSNSKHSRPAQNLSSITEDMVKSPSNQS
MARPGSGTELSEQQHKGNTHFMRKIPPGAEASNILVGEVDFLERTLSCFI
RLSQAVVLGDLTEVPVPTRFVFILLGPPGSQSNFHEIGRAMATLMSDEIF
HEVAYRARKRDHLLSGVDEFLDAVTVLPPGEWDPTIRIEPPAAIPSQEVR
KRPPELPKEEVDEEEEEARLREENGLSRTGRLFGGLINDIKRKAPWYISD
YKDALSMQCVASWIFLYFACLSPIITFGGLLAEATGKHMAAMESLVSGFV
CGMGYGFFSGQPLTILGSTGPVLVFESIIYEFCLKMGWDYMTFRFWIGMW
VAGICIVLTAIDASALVCYITRFTEENFATLIAFIFIYKAIENVMVIGKN
FPVNQGIYDCVCTPPIGSNASVIDYAKYNWDSCESYNGTLVGGDCGTPPT
ENVFLMSVVLCAGTFLISTVLKEFKNALFFPSIVRQYISDFSVLIAIFAM
SFFDYSLGVPTQKLEVPNELKPTLSTRGWLIPPFVEKNPWWSAIIAVFPA
LLGTILIFMDQQITAVIVNRKENKLKKGCGYHLDLFILSILIAICSMMGL
PWFVAATVLSINHVNSLKLESECSAPGEKPQFLGVREQRVTHILIFLTIG
VSVLLTPLLGNIPMPVLFGVFLYMGVASLKGLQFFDRILIMFMPAKYQPD
YMFLRQVPIKRVHLFTMIQLACLIILWLIKSFSQTSILFPLMLVVMIGIR
KALDLVFTRRELKILDDIMPEMTKRAAADDLHKLDAEVGLLARIFPWGKG
SRSRVVTKPPGLDDGIVGSGGAVGAGLITCTTSNANEKEFEAQSSLLKK*
BS28355.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ndae1-PB | 1099 | CG4675-PB | 1..1099 | 1..1099 | 5747 | 100 | Plus |
| Ndae1-PE | 1086 | CG42253-PE | 1..1086 | 14..1099 | 5674 | 100 | Plus |
| Ndae1-PI | 1126 | CG42253-PI | 1..1126 | 1..1099 | 5629 | 96.7 | Plus |
| Ndae1-PC | 1190 | CG31906-PA | 1..1037 | 1..1037 | 5430 | 100 | Plus |
| Ndae1-PD | 1134 | CG42253-PD | 1..1024 | 14..1037 | 5357 | 100 | Plus |
