BS28356.complete Sequence
1955 bp assembled on 2012-04-11
GenBank Submission: KX801676
> BS28356.complete
GAAGTTATCAGTCGACATGTCAAAATTGTTAGAGAAACACTTGCCGAAAA
AGCCCGTGAAAATGGACGAAACGAAGGATATGCGCTATAGTTTGGAGATC
GACGAGGATTTGAGGAGACCCTTGGAGGCGCGGGCCAAGAAAGTTCTGGC
CGTTAATTCTGCCAGTCAAAGGACTGTTAATCTCGGCGAGGATACTATGT
ACGAGGCAGGTGACTTGGAGCACTTGGACGATGGCGATGATAGCTTCAGT
GCCTTTGAGCGCATGTGCGACAAAACCGGTTCCGATCCGGATAGCACTCT
TTTCCAGTACCTGCACAGCGAGGACCGGAGTCAGGTGATGGCCAGGGCTA
GGGATCATAGCACCGACGATCAGAAAGAGATCGATGCACTGCGTCGCATG
CTAGAGGCAGTGGGTACAGAAGACGATCTATTGGAGAACGAAAGTCCCGT
CAAGGGGGCGGAGTGCACTCACCTGGAGGACATTGAGGCGCCGTCGCGCT
TTTGGGACAACACCCTGGCCGGAATGGACGAGACCTCATCCGACTCTGGG
CTGACTCCTAAAGCATTGACCAAGGTTTCGCCTGTCAAAATGGTGGGGCT
GCTTCGCCCCTCAACCATCATCGAAGACAGCGAACTGGAGTCGTCTGATG
TGTCTTCACACACAAGCTTCCAAAGCGCTCGCACCCTAAAGACAAATGCA
TCTAGTTCTTACGAAACAGCCACGGATACTTCCCTCAGTGGAACGCTCCT
AAACGTCGACGAATTGTTTTACGCCGCAATTGCCAAGGCCAAGCCACCAG
GAATGTCCAAGGGAGAGGAGCTGGAGCTCTTAAGCGATCTTCATGGCAGT
CTTAGAGAGCTGGCCTCACTTCCGAAGGATGAGGTCGAGGAGGAAGAGGA
CGATATAGAGGATACAATAATCGAGCTATCCTCTTCTGACGATGAAGAAG
TGCAGCTAGTTCCAGAAGTAAAACAAGAAGACACGTCCCGTGTGTCCTCA
GTCCACGGAAAAGATCACACTGAGCAGAAACCAGCGGAGAAGAGCGTTGA
AAATAAGGAAAATTCGTTGCATTTCAATGATACCATGGAAGAAATGGAGT
ACATGATGCAAAAGGGTATGGAGTACATGGCAGGTGGGGCTCCTTCAGTC
GCCGCAGTCAAGGCAGATTGCCCTGTGCTGCCCAAGACCAAACAAAGCAC
GTTCGTTGTTTCACCGAAGCCGGAACCAAAATCACCGGCTGTAGCCTTTT
TGCAGCCATCAATTCCGCTGCGGTCATCTAATCAGCCACAAACAGTTGTA
GGTTCATCTAGCACGGGTAGAAAGCCGCTCAATGTCGGCCTCACCATGGA
GTGGACCAAAAAGAAATTTTTCAGTGCAGCCTCTGGTATTCCTCAGCGTC
GCCAAAATCAGATAAAGCAGCCATACGCCAACATAGTCAGTCCCATACGC
ACCTACACCCAGAAGTCTGGTACTGCTCCGCTAATGAGTACATTCCGTCC
AACGAGTTCTGATATGCTATCTACACTGGCCATCAGTGAGTTGGAGCAGG
AGTCTCGCTTGTGTCATCCTAAAGCACTTTTCGCAACAAAGGACGAAACA
CCCAAGTCCAGTGAAGCGGAATCTTTAATTATCAATGGAATCGATTCAGC
CGCTGATCTGCTTCCCAAAAAGGCTTACATATCTTCCGAAATCAAGCATG
TGGTTGATGAACGAACTCCTTTGCCCATGCCGAAGGTACCTCAAATTCAA
AAATACCTCAACTCCGCCGTGGAGCCTACTGTTATGCGCCACGATGGCAA
AATGAAAATGCCCGGCGAGGCAGTCCGCAATCCGTCGTCTTCGCATATCC
CACGACGCGCCAATCACAGCCTGGCTGATCTGTCGCTCGCCTCAGGCGAC
GTGTCCTTATACACAATAAGAGATGCCCAAAAGTTTTAAAAGCTTTCTAG
ACCAT
BS28356.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:43:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sip2-RC | 1923 | CG9188-PC | 1..1923 | 17..1939 | 9615 | 100 | Plus |
| sip2-RB | 1974 | CG9188-PB | 75..1974 | 40..1939 | 9500 | 100 | Plus |
| sip2-RE | 1878 | CG9188-PE | 1..1878 | 62..1939 | 9390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:43:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sip2-RC | 2019 | CG9188-RC | 21..1944 | 16..1939 | 9620 | 100 | Plus |
| sip2-RD | 2021 | CG9188-RD | 44..1946 | 37..1939 | 9515 | 100 | Plus |
| sip2-RE | 2040 | CG9188-RE | 66..1965 | 40..1939 | 9500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:43:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6961893..6963554 | 1701..40 | 8310 | 100 | Minus |
| 2L | 23513712 | 2L | 6961591..6961830 | 1939..1700 | 1200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:43:41 has no hits.
BS28356.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 12:37:39 Download gff for
BS28356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip2-RC | 22..1942 | 17..1937 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:50 Download gff for
BS28356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip2-RC | 22..1942 | 17..1937 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:35:39 Download gff for
BS28356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip2-RC | 22..1942 | 17..1937 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:35:39 Download gff for
BS28356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6961593..6961830 | 1700..1937 | 100 | <- | Minus |
| 2L | 6961895..6963554 | 40..1699 | 100 | <- | Minus |
| 2L | 6963633..6963655 | 17..39 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:50 Download gff for
BS28356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6961593..6961830 | 1700..1937 | 100 | <- | Minus |
| arm_2L | 6961895..6963554 | 40..1699 | 100 | <- | Minus |
| arm_2L | 6963633..6963655 | 17..39 | 100 | | Minus |
BS28356.pep Sequence
Translation from 16 to 1938
> BS28356.pep
MSKLLEKHLPKKPVKMDETKDMRYSLEIDEDLRRPLEARAKKVLAVNSAS
QRTVNLGEDTMYEAGDLEHLDDGDDSFSAFERMCDKTGSDPDSTLFQYLH
SEDRSQVMARARDHSTDDQKEIDALRRMLEAVGTEDDLLENESPVKGAEC
THLEDIEAPSRFWDNTLAGMDETSSDSGLTPKALTKVSPVKMVGLLRPST
IIEDSELESSDVSSHTSFQSARTLKTNASSSYETATDTSLSGTLLNVDEL
FYAAIAKAKPPGMSKGEELELLSDLHGSLRELASLPKDEVEEEEDDIEDT
IIELSSSDDEEVQLVPEVKQEDTSRVSSVHGKDHTEQKPAEKSVENKENS
LHFNDTMEEMEYMMQKGMEYMAGGAPSVAAVKADCPVLPKTKQSTFVVSP
KPEPKSPAVAFLQPSIPLRSSNQPQTVVGSSSTGRKPLNVGLTMEWTKKK
FFSAASGIPQRRQNQIKQPYANIVSPIRTYTQKSGTAPLMSTFRPTSSDM
LSTLAISELEQESRLCHPKALFATKDETPKSSEAESLIINGIDSAADLLP
KKAYISSEIKHVVDERTPLPMPKVPQIQKYLNSAVEPTVMRHDGKMKMPG
EAVRNPSSSHIPRRANHSLADLSLASGDVSLYTIRDAQKF*
BS28356.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sip2-PC | 640 | CG9188-PC | 1..640 | 1..640 | 3244 | 100 | Plus |
| sip2-PB | 657 | CG9188-PB | 21..657 | 4..640 | 3210 | 99.4 | Plus |
| sip2-PE | 625 | CG9188-PE | 1..625 | 16..640 | 3167 | 100 | Plus |
| sip2-PD | 625 | CG9188-PD | 1..625 | 16..640 | 3167 | 100 | Plus |
| sip2-PA | 625 | CG9188-PA | 1..625 | 16..640 | 3167 | 100 | Plus |
