BS28357.complete Sequence
1040 bp assembled on 2012-03-08
GenBank Submission: KX806258
> BS28357.complete
GAAGTTATCAGTCGACATGGCTGTCTCGTTGATGTGGTTGTACATACGTA
TTCATAAGTGTGACATTCGTCCATTTGTGGTAGAGGGGAAACAAGTTGGT
CTTATTAAGTCAGATGTTTTAAAACATCTCGAAAAGTATCCTGAAGTATT
TTGCATTCGTGCTTGTGAGCAAACTAAACAGGGTTTGGTAGAGCTAAATC
CTGCTTTTCGTGACTATAACGAGCGCACTGAGCAACTGGAAAAGGTTTTG
CGTAACTTGCGCTCCGAGGGACTTTTTCCTGCATTACAGGGATGGAGAGA
TGAGTATTTCGAGGTAAAAGCAGACTGCAGAGCTCTACTTAAAATGGAAC
GAGCTGCTACTCCGCTCTTTGGAGTGCGCAAGTACGGCGTCGATATAAAC
GGTTACGTAAGACATCCGACGCTTGGACTATGCATTTGGCTGCAGCAGCG
GTCAAACACAAAAGAGACCTGGCCTGGAAAGTGGGACAATATGGTAGGCG
GTGGACTTTCAGTCGGCTTTGGTATTAAGGAAACAGCCATTAAGGAGGCT
GCAGAGGAGGCATCAATTCCTTCTGACCTAGTCAAGAATTTGGTGTCCGC
AGGATGTGTCTCATTTTACTTTGAAAGCCGACAAGGACTTTTTCCCAATA
CCGAATATGTTTTCGACTTAGAGCTACCGCTTGACTTTGTGCCTCAAAAC
GCTGACGGGGAGGTCCAGGCCTTTGAGCTGCTAACAGCCAAGGACTGTGT
GGAGCGCGTTTTTACTTCAGATTTCAAGACAACTTCAGCGCCTGTGGTGA
TTGATTTTCTTATCCGACACGGTCACATAACAGCAGATGATGTTGTCGAC
TTCACACAAATCGTTGAGCTCTTGCACGTGCCCTTACAGTCCATATATAC
GTACAAGACACGCTTTGAGCAATCCATAAAACAACCTCAATTCTTGCCAG
GTGATTCCAAAAACTGTAACTGTGCAATATTTCAGAAAATATCAATGGAG
AATGGGCACAAGAAGGCGAATTAAAAGCTTTCTAGACCAT
BS28357.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:01:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12567-RD | 1008 | CG12567-PD | 1..1008 | 17..1024 | 5025 | 99.9 | Plus |
| CG12567-RG | 1050 | CG12567-PG | 74..1050 | 48..1024 | 4870 | 99.9 | Plus |
| CG12567-RF | 1026 | CG12567-PF | 50..1026 | 48..1024 | 4870 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:01:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12567-RD | 1875 | CG12567-RD | 32..1039 | 17..1024 | 5025 | 99.9 | Plus |
| CG12567-RG | 1907 | CG12567-RG | 95..1071 | 48..1024 | 4870 | 99.9 | Plus |
| CG12567-RF | 1885 | CG12567-RF | 73..1049 | 48..1024 | 4870 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:01:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 23162212..23162876 | 842..178 | 3310 | 99.8 | Minus |
| 2L | 23513712 | 2L | 23323955..23324192 | 842..605 | 1055 | 96.2 | Minus |
| 2L | 23513712 | 2L | 23415916..23416153 | 605..842 | 1055 | 96.2 | Plus |
| 2L | 23513712 | 2L | 23161958..23162140 | 1024..842 | 915 | 100 | Minus |
| 2L | 23513712 | 2L | 23162924..23163058 | 182..48 | 675 | 100 | Minus |
| 2L | 23513712 | 2L | 23320508..23320637 | 1024..895 | 575 | 96.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:01:48 has no hits.
BS28357.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:39 Download gff for
BS28357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12567-RD | 32..1037 | 17..1022 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:04 Download gff for
BS28357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12567-RD | 32..1037 | 17..1022 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:09:24 Download gff for
BS28357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12567-RD | 32..1037 | 17..1022 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:09:24 Download gff for
BS28357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 23161960..23162139 | 843..1022 | 100 | <- | Minus |
| 2L | 23162212..23162872 | 182..842 | 99 | <- | Minus |
| 2L | 23162925..23163058 | 48..181 | 100 | <- | Minus |
| 2L | 23173892..23173922 | 17..47 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:04 Download gff for
BS28357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2LHet | 20471..20650 | 843..1022 | 100 | <- | Minus |
| 2LHet | 20723..21383 | 182..842 | 99 | <- | Minus |
| 2LHet | 21436..21569 | 48..181 | 100 | <- | Minus |
| 2LHet | 32403..32433 | 17..47 | 100 | | Minus |
BS28357.pep Sequence
Translation from 16 to 1023
> BS28357.pep
MAVSLMWLYIRIHKCDIRPFVVEGKQVGLIKSDVLKHLEKYPEVFCIRAC
EQTKQGLVELNPAFRDYNERTEQLEKVLRNLRSEGLFPALQGWRDEYFEV
KADCRALLKMERAATPLFGVRKYGVDINGYVRHPTLGLCIWLQQRSNTKE
TWPGKWDNMVGGGLSVGFGIKETAIKEAAEEASIPSDLVKNLVSAGCVSF
YFESRQGLFPNTEYVFDLELPLDFVPQNADGEVQAFELLTAKDCVERVFT
SDFKTTSAPVVIDFLIRHGHITADDVVDFTQIVELLHVPLQSIYTYKTRF
EQSIKQPQFLPGDSKNCNCAIFQKISMENGHKKAN*
BS28357.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:51:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12567-PD | 335 | CG12567-PD | 1..335 | 1..335 | 1770 | 100 | Plus |
| CG12567-PF | 341 | CG12567-PF | 16..341 | 10..335 | 1714 | 99.4 | Plus |
| CG12567-PG | 349 | CG12567-PG | 26..349 | 12..335 | 1713 | 100 | Plus |
| CG12567-PA | 349 | CG12567-PA | 26..349 | 12..335 | 1713 | 100 | Plus |
| CG12567-PC | 70 | CG12567-PC | 26..69 | 12..55 | 236 | 100 | Plus |
