BS28361.complete Sequence
491 bp assembled on 2012-03-08
GenBank Submission: KX803887
> BS28361.complete
GAAGTTATCAGTCGACATGGAAACGGCCAGAATGGAGACGGCGATGGAGA
CACATTTTATGGCCAAAATGGGGAAGTGGATGACCCCTGAGGAGGAGGCG
CGTCAAAAGTTCATCATGAGGGAGCGGGACCGCGAGCGGAAACGGATCAA
GCGCATGAATCCCGAGTACAGGCAGATGGAACGAGAGCGGGATCGGTTCC
GCAAGCTGACACCCAGGCCCAGTCTGATGACCCCCGAGGAGGAGGCCCGC
CACAAGTTCATCATGCGGGAGCGGGATCGCGAGAGGAAGCGGATCAAGCG
CCTCAATCCCGAGTACCGGCGAATGGAACGCGAGCGCGATCGATTCCGCA
AGAAGGCACGACGTGCTAACGTAGCATTTTTCCAATATTCTATATTATCT
ATAAACATAATCCCACACTCGAACACTCGATTCACACGACACACACACAC
ACACTCACATGGCTTGAGAGATTAGAAGCTTTCTAGACCAT
BS28361.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:03:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5674-RB | 459 | CG5674-PB | 1..459 | 17..475 | 2295 | 100 | Plus |
| CG5674-RA | 1470 | CG5674-PA | 1..339 | 17..355 | 1695 | 100 | Plus |
| CG5674-RE | 1338 | CG5674-PE | 1..297 | 17..316 | 1075 | 91.3 | Plus |
| CG5674-RB | 459 | CG5674-PB | 63..189 | 226..352 | 395 | 87.4 | Plus |
| CG5674-RB | 459 | CG5674-PB | 210..336 | 79..205 | 395 | 87.4 | Plus |
| CG5674-RA | 1470 | CG5674-PA | 63..189 | 226..352 | 395 | 87.4 | Plus |
| CG5674-RA | 1470 | CG5674-PA | 210..336 | 79..205 | 395 | 87.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:03:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5674-RB | 3371 | CG5674-RB | 168..626 | 17..475 | 2295 | 100 | Plus |
| CG5674-RA | 3112 | CG5674-RA | 168..506 | 17..355 | 1695 | 100 | Plus |
| CG5674-RE | 2980 | CG5674-RE | 168..464 | 17..316 | 1075 | 91.3 | Plus |
| CG5674-RB | 3371 | CG5674-RB | 230..356 | 226..352 | 395 | 87.4 | Plus |
| CG5674-RB | 3371 | CG5674-RB | 377..503 | 79..205 | 395 | 87.4 | Plus |
| CG5674-RA | 3112 | CG5674-RA | 230..356 | 226..352 | 395 | 87.4 | Plus |
| CG5674-RA | 3112 | CG5674-RA | 377..503 | 79..205 | 395 | 87.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:03:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17971872..17972123 | 224..475 | 1260 | 100 | Plus |
| 2L | 23513712 | 2L | 17969370..17969518 | 75..223 | 745 | 100 | Plus |
| 2L | 23513712 | 2L | 17969374..17969500 | 226..352 | 395 | 87.4 | Plus |
| 2L | 23513712 | 2L | 17971874..17972000 | 79..205 | 395 | 87.4 | Plus |
| 2L | 23513712 | 2L | 17963546..17963605 | 17..76 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:03:51 has no hits.
BS28361.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:42 Download gff for
BS28361.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5674-RB | 209..667 | 17..475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:19 Download gff for
BS28361.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5674-RB | 168..626 | 17..475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:10:00 Download gff for
BS28361.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5674-RB | 168..626 | 17..475 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:10:00 Download gff for
BS28361.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17971872..17972123 | 224..475 | 100 | | Plus |
| 2L | 17969372..17969518 | 77..223 | 100 | -> | Plus |
| 2L | 17963546..17963605 | 17..76 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:19 Download gff for
BS28361.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17963546..17963605 | 17..76 | 100 | -> | Plus |
| arm_2L | 17969372..17969518 | 77..223 | 100 | -> | Plus |
| arm_2L | 17971872..17972123 | 224..475 | 100 | | Plus |
BS28361.pep Sequence
Translation from 16 to 474
> BS28361.pep
METARMETAMETHFMAKMGKWMTPEEEARQKFIMRERDRERKRIKRMNPE
YRQMERERDRFRKLTPRPSLMTPEEEARHKFIMRERDRERKRIKRLNPEY
RRMERERDRFRKKARRANVAFFQYSILSINIIPHSNTRFTRHTHTHSHGL
RD*
BS28361.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:51:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5674-PB | 152 | CG5674-PB | 1..152 | 1..152 | 800 | 100 | Plus |
| CG5674-PA | 489 | CG5674-PA | 1..113 | 1..113 | 592 | 100 | Plus |
| CG5674-PE | 445 | CG5674-PE | 1..122 | 1..123 | 561 | 90.2 | Plus |
| CG5674-PD | 396 | CG5674-PD | 1..87 | 1..116 | 276 | 51.7 | Plus |
| CG5674-PA | 489 | CG5674-PA | 112..180 | 20..116 | 188 | 42.3 | Plus |
