BS28365.complete Sequence
992 bp assembled on 2012-03-08
GenBank Submission: KX804738
> BS28365.complete
GAAGTTATCAGTCGACATGAAGATCTTTGTGTGTCTCCTGGCTACCTTGG
CTGCCACCGCATCGGCTGGCTTCATTGGCGGATCCGGCGGTGGTGGCGGT
GGTGGCCACCAGGAGGTGAAGACCATCCAGGTGATCCACCAGGAGGGTGG
CGGCTACTCCGGCGGCGGTGGTCATGGCGGTTACTCTGGTGGCCATGGAG
GCTACTCTGGCGGCGGCCATCAGGAGATTAAGACCATCAAGGTCATTCAG
CAGGAAGGTGGCGGCTATTCCGGCGGTCATGGCGGTTACTCCGGTGGTCA
CGGTGGCTACTCTGGCGGTGGACACCAGGAGGTGAAGACCGTTAAGGTCA
TCCATGAGGAGGGACATGCCCTGGGCGGCGGCGGTTATGCCGGAGGCCTT
GCCGGCCATGGACACGGACATGGTGGCCATCAGGAGGTAAAATTGGTCAA
GGTCATCCATGAGGAGGGCGGTCATGGCCACGGACACGGTGGTGGCTACT
CCCACGGTGGTGGCTACTCCGGCGGTCATCAGGAGGTTAAGACTGTGAAG
GTCATCCATCAGGAGGTTGGCGGTCATGGCGGTTACTCTGGCGGACATGG
TGGCTACTCTGGCGGCGGTCACCAGGAGGTCAAGACCGTTAAGGTCATCC
ACGAGGAAGGACACGCTTTGGGCGGCGGCGGCGGCTATGCCGGTGGCTAC
TCCGGCCATGGACATGGACATGGCGGCCACGAGGAAGTGAAGGTGGTCAA
GGTGATCCATGAGGAGGGCGGTCACAGCCACGATCACGGTCATTCGCACG
GCGGATTCGAAGAGGTCAAGACCATCAAGGTCATTCACGAGGACGGTGGC
CATGCCCACGGCCACGGACCCGCCCCCATCATCAGCAACGAATACCTGCC
GCCCAGCAATGAGTATCTGCCCCCCGTATCCGCTCCCCAGCCCGGATATC
TGCCCCCATCCTCCAGCTGGAAGTGAAAGCTTTCTAGACCAT
BS28365.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:08:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15731-RA | 960 | CG15731-PA | 1..960 | 17..976 | 4800 | 100 | Plus |
| CG15731-RA | 960 | CG15731-PA | 256..474 | 569..790 | 565 | 84.7 | Plus |
| CG15731-RA | 960 | CG15731-PA | 553..774 | 272..490 | 565 | 84.7 | Plus |
| CG15731-RA | 960 | CG15731-PA | 88..230 | 215..351 | 290 | 81.8 | Plus |
| CG15731-RA | 960 | CG15731-PA | 199..335 | 104..246 | 290 | 81.8 | Plus |
| CG15731-RA | 960 | CG15731-PA | 154..242 | 572..660 | 265 | 86.5 | Plus |
| CG15731-RA | 960 | CG15731-PA | 556..644 | 170..258 | 265 | 86.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:08:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15731-RA | 1180 | CG15731-RA | 74..1033 | 17..976 | 4800 | 100 | Plus |
| CG15731-RA | 1180 | CG15731-RA | 329..547 | 569..790 | 565 | 84.7 | Plus |
| CG15731-RA | 1180 | CG15731-RA | 626..847 | 272..490 | 565 | 84.7 | Plus |
| CG15731-RA | 1180 | CG15731-RA | 161..303 | 215..351 | 290 | 81.8 | Plus |
| CG15731-RA | 1180 | CG15731-RA | 272..408 | 104..246 | 290 | 81.8 | Plus |
| CG15731-RA | 1180 | CG15731-RA | 227..315 | 572..660 | 265 | 86.5 | Plus |
| CG15731-RA | 1180 | CG15731-RA | 629..717 | 170..258 | 265 | 86.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:08:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12456556..12457511 | 976..21 | 4780 | 100 | Minus |
| X | 23542271 | X | 12456742..12456963 | 490..272 | 565 | 84.7 | Minus |
| X | 23542271 | X | 12457042..12457260 | 790..569 | 565 | 84.7 | Minus |
| X | 23542271 | X | 12457181..12457317 | 246..104 | 290 | 81.8 | Minus |
| X | 23542271 | X | 12457286..12457428 | 351..215 | 290 | 81.8 | Minus |
| X | 23542271 | X | 12456872..12456960 | 258..170 | 265 | 86.5 | Minus |
| X | 23542271 | X | 12457274..12457362 | 660..572 | 265 | 86.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:08:28 has no hits.
BS28365.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:44 Download gff for
BS28365.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15731-RA | 71..1029 | 17..975 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:34 Download gff for
BS28365.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15731-RA | 74..1032 | 17..975 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:11:46 Download gff for
BS28365.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15731-RA | 74..1032 | 17..975 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:11:46 Download gff for
BS28365.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12456557..12457513 | 17..975 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:34 Download gff for
BS28365.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12350590..12351546 | 17..975 | 99 | | Minus |
BS28365.pep Sequence
Translation from 16 to 975
> BS28365.pep
MKIFVCLLATLAATASAGFIGGSGGGGGGGHQEVKTIQVIHQEGGGYSGG
GGHGGYSGGHGGYSGGGHQEIKTIKVIQQEGGGYSGGHGGYSGGHGGYSG
GGHQEVKTVKVIHEEGHALGGGGYAGGLAGHGHGHGGHQEVKLVKVIHEE
GGHGHGHGGGYSHGGGYSGGHQEVKTVKVIHQEVGGHGGYSGGHGGYSGG
GHQEVKTVKVIHEEGHALGGGGGYAGGYSGHGHGHGGHEEVKVVKVIHEE
GGHSHDHGHSHGGFEEVKTIKVIHEDGGHAHGHGPAPIISNEYLPPSNEY
LPPVSAPQPGYLPPSSSWK*
BS28365.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:51:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15731-PA | 319 | CG15731-PA | 1..319 | 1..319 | 1798 | 100 | Plus |
| CG14191-PA | 193 | CG14191-PA | 1..173 | 1..237 | 381 | 40.6 | Plus |
| CG12523-PB | 250 | CG12523-PB | 1..220 | 1..310 | 370 | 36.6 | Plus |
| CG12523-PA | 250 | CG12523-PA | 1..220 | 1..310 | 370 | 36.6 | Plus |
| CG9083-PB | 317 | CG9083-PB | 37..317 | 16..319 | 344 | 35.7 | Plus |
| CG12523-PB | 250 | CG12523-PB | 25..214 | 151..318 | 242 | 38 | Plus |
| CG12523-PA | 250 | CG12523-PA | 25..214 | 151..318 | 242 | 38 | Plus |
| CG14191-PA | 193 | CG14191-PA | 19..166 | 119..284 | 215 | 37.8 | Plus |
