BS28369.complete Sequence
998 bp assembled on 2012-03-08
GenBank Submission: KX804625
> BS28369.complete
GAAGTTATCAGTCGACATGTACATCACAACGGGCAAAACGTTTGCGGTGC
TGAAAGGACCTTTACGTGATTGTTTTTTTCTTAGTAAGAGATGGCCAGCT
GTTCAACAACTGCACTTAAGTGTCGCAATGGGAAATTATGTGAATGAAGC
CTCAATTCCCCTTCCAATCAATGTGGACTCTGCGGAAACAACTCGATTCT
CCCCCCAGCGCTCGCGTGACATTTCGTCTACAGTGATTAATGCACAAGCA
CCAATCTCAAGCATTGATATCACAACTGACAACAGTTTTCATGCAGTCCT
AAGCGATCCAAATATTTGTCAAGATCCACATGTACAGTCCTATGATTGTT
TCGGGTTGATCAGTCTTAATTCCGCGATGCAAAGCAATGTACCAACACCG
TTTGGGGGGCTTAACAAGTTTTCTCATCTGAACATGCCTGGCGGACAATG
GTCCCAGGAATTCAAGTTTACAGCGCAAAACATGCAGTGCTCTCACTACA
GCGGTCTTCGCGAAAGTTTGCGAGCGGATTGGGCGACTTACGATCAGAAT
GCTACTCTTAAAACGAATGACCAAGGGTTGTTTAATCGAAGATATTATAG
CACCCAATCACCTATGCAAAACTCTTCCACAAAAACACCTACAGGTGCAA
AACTAAGTAAAAGTGAGCAGCTGAAGAGGGCATTTAAGGAATATGGAGCG
CCAATTGTTGCGTTTCACGTAGGAATTTCACTGATTTCTCTTGCCGGTTT
CTATGTGCTTGTATCAAGTGGCATAAACTTGGTCCCAGCTCTGGAGTGTA
TTGGAATTGCATCACCCGCTATTGTAGAAAAAGTGGCAACGGGGAGCACC
TTTGTTGTTGCGTATGCCGTACACAAAGTCTTTGCCCCTGCTAGAATAAG
TATCACGTTAGGTTCTGTGCCATTTGTTGTACGCTATATTCGATCTAAGA
AATCGCAAATACCAAAGCCAAAAAATACTTAGAAGCTTTCTAGACCAT
BS28369.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:12:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17508-RA | 966 | CG17508-PA | 1..966 | 17..982 | 4830 | 100 | Plus |
| CG17508-RB | 585 | CG17508-PB | 1..560 | 17..576 | 2800 | 100 | Plus |
| CG15403-RA | 603 | CG15403-PA | 281..533 | 654..906 | 320 | 75.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:12:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17508-RA | 1228 | CG17508-RA | 82..1048 | 17..983 | 4835 | 100 | Plus |
| CG17508-RB | 1145 | CG17508-RB | 82..641 | 17..576 | 2800 | 100 | Plus |
| CG15403-RA | 855 | CG15403-RA | 411..663 | 654..906 | 320 | 75.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:12:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5609011..5609490 | 97..576 | 2400 | 100 | Plus |
| 2R | 25286936 | 2R | 5611190..5611406 | 767..983 | 1085 | 100 | Plus |
| 2R | 25286936 | 2R | 5610062..5610256 | 574..768 | 975 | 100 | Plus |
| 2R | 25286936 | 2R | 5608716..5608797 | 17..98 | 410 | 100 | Plus |
| 2L | 23513712 | 2L | 3129045..3129297 | 654..906 | 320 | 75.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:12:25 has no hits.
BS28369.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:46 Download gff for
BS28369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17508-RA | 93..1058 | 17..982 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:47 Download gff for
BS28369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17508-RA | 82..1047 | 17..982 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:13:13 Download gff for
BS28369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17508-RA | 82..1047 | 17..982 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:13:13 Download gff for
BS28369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5608716..5608797 | 17..98 | 100 | -> | Plus |
| 2R | 5609013..5609489 | 99..575 | 100 | -> | Plus |
| 2R | 5610064..5610256 | 576..768 | 100 | -> | Plus |
| 2R | 5611192..5611405 | 769..982 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:47 Download gff for
BS28369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1496221..1496302 | 17..98 | 100 | -> | Plus |
| arm_2R | 1496518..1496994 | 99..575 | 100 | -> | Plus |
| arm_2R | 1497569..1497761 | 576..768 | 100 | -> | Plus |
| arm_2R | 1498697..1498910 | 769..982 | 100 | | Plus |
BS28369.pep Sequence
Translation from 16 to 981
> BS28369.pep
MYITTGKTFAVLKGPLRDCFFLSKRWPAVQQLHLSVAMGNYVNEASIPLP
INVDSAETTRFSPQRSRDISSTVINAQAPISSIDITTDNSFHAVLSDPNI
CQDPHVQSYDCFGLISLNSAMQSNVPTPFGGLNKFSHLNMPGGQWSQEFK
FTAQNMQCSHYSGLRESLRADWATYDQNATLKTNDQGLFNRRYYSTQSPM
QNSSTKTPTGAKLSKSEQLKRAFKEYGAPIVAFHVGISLISLAGFYVLVS
SGINLVPALECIGIASPAIVEKVATGSTFVVAYAVHKVFAPARISITLGS
VPFVVRYIRSKKSQIPKPKNT*
BS28369.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:51:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17508-PA | 321 | CG17508-PA | 1..321 | 1..321 | 1659 | 100 | Plus |
| CG17508-PB | 194 | CG17508-PB | 1..187 | 1..187 | 993 | 100 | Plus |
| CG15403-PA | 200 | CG15403-PA | 53..200 | 164..321 | 421 | 60.1 | Plus |
