Clone BS28370 Report

Search the DGRC for BS28370

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:283
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptAcp1-RA
Protein status:BS28370.pep: full length peptide match
Sequenced Size:440

Clone Sequence Records

BS28370.complete Sequence

440 bp assembled on 2012-03-08

GenBank Submission: KX802979

> BS28370.complete
GAAGTTATCAGTCGACATGAAATTCGCCGTCGCCGTTATCTTCACCTTGG
CCCTCGCCATGGGCGTGCAGTCGTCTGTGATCCCCCTGCTGTCCCAGGTG
GCTGGACATGGACTGTCCTACACCGCCGTTTCCGGACCCGCTGTGGTGGC
CTCTCCCTGGGCCGTTCCCGCCGCCCACTGGCCTGCTGCCGTGAACGTGG
CTTCGTGGCCTCCGGCAGCGATCCACGCCGCCGCTCCTGCCGTGCTTGCT
GCCCCTGCTCCCGCTGTGGTTGCTGCTCATGCTCCCTCAGTCGTCGTGGC
CCCAGTGGCTCACAGTGGCGTCTACACTGCCCAGACCCGTGGTGCCATTC
ACACCGCTCCTCTGGCCGGACACATCCAGTCGGTGGCCTCCATCAATGCC
GCTCCCGCACCCGGAACCTTGTAAAAGCTTTCTAGACCAT

BS28370.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
Acp1-RA 408 CG7216-PA 1..408 17..424 2040 100 Plus
CG31904-RB 1212 CG31904-PB 670..1060 23..424 1810 97.3 Plus
CG31904-RD 1212 CG31904-PD 670..1060 23..424 1810 97.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
Acp1-RA 858 CG7216-RA 56..464 16..424 2045 100 Plus
CG31904-RB 3572 CG31904-RB 2781..3171 23..424 1810 97.3 Plus
CG31904-RD 1943 CG31904-RD 1152..1542 23..424 1810 97.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7740956..7741357 424..23 2010 100 Minus
2L 23513712 2L 7734816..7735206 424..23 1810 97.3 Minus
2L 23513712 2L 7744256..7744303 376..329 180 91.7 Minus
Blast to na_te.dros performed on 2014-11-28 08:02:07 has no hits.

BS28370.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:40 Download gff for BS28370.complete
Subject Subject Range Query Range Percent Splice Strand
Acp1-RA 62..467 17..422 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:07 Download gff for BS28370.complete
Subject Subject Range Query Range Percent Splice Strand
Acp1-RA 57..462 17..422 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:09:30 Download gff for BS28370.complete
Subject Subject Range Query Range Percent Splice Strand
Acp1-RA 57..462 17..422 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:09:30 Download gff for BS28370.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7740958..7741363 17..422 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:07 Download gff for BS28370.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7740958..7741363 17..422 99   Minus

BS28370.pep Sequence

Translation from 16 to 423

> BS28370.pep
MKFAVAVIFTLALAMGVQSSVIPLLSQVAGHGLSYTAVSGPAVVASPWAV
PAAHWPAAVNVASWPPAAIHAAAPAVLAAPAPAVVAAHAPSVVVAPVAHS
GVYTAQTRGAIHTAPLAGHIQSVASINAAPAPGTL*

BS28370.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
Acp1-PA 135 CG7216-PA 1..135 1..135 678 100 Plus
CG31904-PB 403 CG31904-PB 224..341 3..120 596 100 Plus
CG31904-PD 403 CG31904-PD 224..341 3..120 596 100 Plus
CG7203-PC 129 CG7203-PC 1..128 1..134 276 52.9 Plus
CG7203-PB 129 CG7203-PB 1..128 1..134 276 52.9 Plus